diff --git a/pkgs/development/ocaml-modules/biotk/default.nix b/pkgs/development/ocaml-modules/biotk/default.nix new file mode 100644 index 000000000000..33a98f71cb67 --- /dev/null +++ b/pkgs/development/ocaml-modules/biotk/default.nix @@ -0,0 +1,56 @@ +{ lib +, buildDunePackage +, fetchurl +, angstrom-unix +, binning +, ocaml-crunch +, camlzip +, core_kernel +, core_unix +, csvfields +, fmt +, gsl +, ppx_csv_conv +, ppx_deriving +, rresult +, tyxml +, uri +, vg +}: + +buildDunePackage rec { + pname = "biotk"; + version = "0.2.0"; + + minimalOCamlVersion = "4.13"; + + src = fetchurl { + url = "https://github.com/pveber/biotk/releases/download/v${version}/biotk-${version}.tbz"; + hash = "sha256-FQvbVj5MmraSN6AmOckKgJ/LB14E/pCsPvPvNppcv7A="; + }; + + nativeBuildInputs = [ ocaml-crunch ]; + + buildInputs = [ ppx_csv_conv ]; + + propagatedBuildInputs = [ + angstrom-unix + binning + camlzip + core_kernel + core_unix + csvfields + fmt + gsl + ppx_deriving + rresult + tyxml + uri + vg + ]; + + meta = { + description = "Toolkit for bioinformatics in OCaml"; + license = lib.licenses.cecill-c; + }; +} diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 5a218122a3a6..de27e8d83d8b 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -92,6 +92,8 @@ let biocaml = janeStreet_0_15.biocaml; + biotk = janeStreet_0_15.biotk; + bisect_ppx = callPackage ../development/ocaml-modules/bisect_ppx { }; bistro = callPackage ../development/ocaml-modules/bistro { }; @@ -821,6 +823,15 @@ let cfstream = self.cfstream.override { inherit core_kernel; }; }; + biotk = let + angstrom = self.angstrom.override { inherit ppx_let; }; + in callPackage ../development/ocaml-modules/biotk { + angstrom-unix = self.angstrom-unix.override { inherit angstrom; }; + ppx_deriving = self.ppx_deriving.override { inherit (jsDeps) ppxlib; }; + uri = self.uri.override { inherit angstrom; }; + vg = self.vg.override { htmlcBackend = false; }; + }; + phylogenetics = let angstrom = self.angstrom.override { inherit ppx_let; }; in callPackage ../development/ocaml-modules/phylogenetics {