Merge pull request #299256 from NixOS/pr/snakemake-storage-plugin-s3_init
python311Packages.snakemake-storage-plugin-{s3,xrootd}: init
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commit
17bd78bfb1
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, boto3
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, botocore
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, poetry-core
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, snakemake
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, snakemake-interface-storage-plugins
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, snakemake-interface-common
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, urllib3
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}:
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buildPythonPackage rec {
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pname = "snakemake-storage-plugin-s3";
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version = "0.2.10";
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format = "pyproject";
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src = fetchFromGitHub {
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owner = "snakemake";
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repo = pname;
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rev = "refs/tags/v${version}";
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hash = "sha256-k21DRQdSUFkdwNb7MZJmClhIg+pdSc7H6FkDrbf4DT8=";
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};
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postPatch = ''
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substituteInPlace pyproject.toml \
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--replace ">=2.0,<2.2" "*"
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'';
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nativeBuildInputs = [
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poetry-core
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];
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propagatedBuildInputs = [
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boto3
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botocore
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snakemake-interface-storage-plugins
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snakemake-interface-common
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urllib3
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];
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nativeCheckInputs = [
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snakemake
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];
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pythonImportsCheck = [ "snakemake_storage_plugin_s3" ];
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meta = with lib; {
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description = "A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)";
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homepage = "https://github.com/snakemake/snakemake-storage-plugin-s3";
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license = licenses.mit;
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maintainers = with maintainers; [ veprbl ];
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};
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}
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@ -0,0 +1,51 @@
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, poetry-core
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, snakemake
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, snakemake-interface-storage-plugins
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, snakemake-interface-common
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, xrootd
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}:
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buildPythonPackage rec {
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pname = "snakemake-storage-plugin-xrootd";
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version = "unstable-2023-12-16";
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format = "pyproject";
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src = fetchFromGitHub {
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owner = "snakemake";
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repo = pname;
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rev = "408f1e956b5427c34b49eeca340492a438e8eccb";
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hash = "sha256-CcSG//D9kz0Q4LtaSngJpCtY0dbNFFuKMVmBxR1fcMo=";
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};
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# xrootd<6.0.0,>=5.6.4 not satisfied by version 5.7rc20240303
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postPatch = ''
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substituteInPlace pyproject.toml \
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--replace 'xrootd = "^5.6.4"' ""
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'';
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nativeBuildInputs = [
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poetry-core
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];
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propagatedBuildInputs = [
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snakemake-interface-storage-plugins
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snakemake-interface-common
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xrootd
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];
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nativeCheckInputs = [
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snakemake
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];
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pythonImportsCheck = [ "snakemake_storage_plugin_xrootd" ];
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meta = with lib; {
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description = "A Snakemake storage plugin for handling input and output via XRootD";
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homepage = "https://github.com/snakemake/snakemake-storage-plugin-xrootd";
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license = licenses.mit;
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maintainers = with maintainers; [ veprbl ];
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};
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}
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@ -13914,6 +13914,10 @@ self: super: with self; {
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inherit (self) python;
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inherit (self) python;
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});
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});
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snakemake = toPythonModule (pkgs.snakemake.override {
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python3 = python;
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});
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snakemake-executor-plugin-cluster-generic = callPackage ../development/python-modules/snakemake-executor-plugin-cluster-generic { };
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snakemake-executor-plugin-cluster-generic = callPackage ../development/python-modules/snakemake-executor-plugin-cluster-generic { };
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snakemake-interface-common = callPackage ../development/python-modules/snakemake-interface-common { };
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snakemake-interface-common = callPackage ../development/python-modules/snakemake-interface-common { };
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@ -13924,6 +13928,10 @@ self: super: with self; {
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snakemake-interface-storage-plugins = callPackage ../development/python-modules/snakemake-interface-storage-plugins { };
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snakemake-interface-storage-plugins = callPackage ../development/python-modules/snakemake-interface-storage-plugins { };
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snakemake-storage-plugin-s3 = callPackage ../development/python-modules/snakemake-storage-plugin-s3 { };
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snakemake-storage-plugin-xrootd = callPackage ../development/python-modules/snakemake-storage-plugin-xrootd { };
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snakebite = callPackage ../development/python-modules/snakebite { };
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snakebite = callPackage ../development/python-modules/snakebite { };
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snakeviz = callPackage ../development/python-modules/snakeviz { };
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snakeviz = callPackage ../development/python-modules/snakeviz { };
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