Merge pull request #309680 from TomaSajt/python-refactors

treewide: make some unmaintained python packages use the pypa builder
2024-05-08 09:27:37 +02:00 · 2024-05-08 09:27:37 +02:00 · 1976504e44
parent 20f90ebed6 02b02c9941
commit 1976504e44
31 changed files with 255 additions and 136 deletions
--- a/pkgs/development/python-modules/accessible-pygments/default.nix
+++ b/pkgs/development/python-modules/accessible-pygments/default.nix
@ -2,13 +2,14 @@
 , buildPythonPackage
 , fetchPypi
 , pythonOlder
+, setuptools
 , pygments
 }:

 buildPythonPackage rec {
  pname = "accessible-pygments";
  version = "0.0.4";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -17,7 +18,11 @@ buildPythonPackage rec {
    hash = "sha256-57V6mxWVjpYBx+nrB6RAyBMoNUWiCXPyV0pfRT0OlT4=";
  };

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    pygments
  ];

--- a/pkgs/development/python-modules/accupy/default.nix
+++ b/pkgs/development/python-modules/accupy/default.nix
@ -3,6 +3,7 @@
 , buildPythonPackage
 , fetchFromGitHub
 , pythonOlder
+, setuptools
 , mpmath
 , numpy
 , pybind11
@ -18,17 +19,19 @@
 buildPythonPackage rec {
  pname = "accupy";
  version = "0.3.6";
-  format = "setuptools";
+  pyproject = true;
+
  disabled = pythonOlder "3.7";

  src = fetchFromGitHub {
    owner = "nschloe";
-    repo = pname;
+    repo = "accupy";
    rev = version;
-    sha256 = "0sxkwpp2xy2jgakhdxr4nh1cspqv8l89kz6s832h05pbpyc0n767";
+    hash = "sha256-xxwLmL/rFgDFQNr8mRBFG1/NArQk9wanelL4Lu7ls2s=";
  };

-  nativeBuildInputs = [
+  build-system = [
+    setuptools
    pybind11
  ];

@ -36,7 +39,7 @@ buildPythonPackage rec {
    eigen
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    mpmath
    numpy
    pyfma
@ -51,7 +54,7 @@ buildPythonPackage rec {

  postConfigure = ''
   substituteInPlace setup.py \
-     --replace "/usr/include/eigen3/" "${eigen}/include/eigen3/"
+     --replace-fail "/usr/include/eigen3/" "${eigen}/include/eigen3/"
  '';

  preBuild = ''
@ -66,10 +69,12 @@ buildPythonPackage rec {
  # decouple ourselves from an unnecessary build dep
  preCheck = ''
    for f in test/test*.py ; do
-      substituteInPlace $f --replace 'import perfplot' ""
+      substituteInPlace $f --replace-quiet 'import perfplot' ""
    done
  '';
+
  disabledTests = [ "test_speed_comparison1" "test_speed_comparison2" ];
+
  pythonImportsCheck = [ "accupy" ];

  meta = with lib; {
--- a/pkgs/development/python-modules/adal/default.nix
+++ b/pkgs/development/python-modules/adal/default.nix
@ -6,12 +6,13 @@
 , pytestCheckHook
 , python-dateutil
 , requests
+, setuptools
 }:

 buildPythonPackage rec {
  pname = "adal";
  version = "1.2.7";
-  format = "setuptools";
+  pyproject = true;

  src = fetchFromGitHub {
    owner = "AzureAD";
@ -24,7 +25,11 @@ buildPythonPackage rec {
    sed -i '/cryptography/d' setup.py
  '';

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    pyjwt
    python-dateutil
    requests
--- a/pkgs/development/python-modules/aioamqp/default.nix
+++ b/pkgs/development/python-modules/aioamqp/default.nix
@ -3,23 +3,28 @@
 , fetchFromGitHub
 , pamqp
 , pythonOlder
+, setuptools
 }:

 buildPythonPackage rec {
  pname = "aioamqp";
  version = "0.15.0";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

  src = fetchFromGitHub {
    owner = "Polyconseil";
-    repo = pname;
-    rev = "${pname}-${version}";
+    repo = "aioamqp";
+    rev = "aioamqp-${version}";
    hash = "sha256-fssPknJn1tLtzb+2SFyZjfdhUdD8jqkwlInoi5uaplk=";
  };

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    pamqp
  ];

--- a/pkgs/development/python-modules/aiocontextvars/default.nix
+++ b/pkgs/development/python-modules/aiocontextvars/default.nix
@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, setuptools
 , pytestCheckHook
 , pytest-asyncio
 , isPy27
@ -9,21 +10,24 @@
 buildPythonPackage rec {
  pname = "aiocontextvars";
  version = "0.2.2";
-  format = "setuptools";
+  pyproject = true;
+
  disabled = isPy27;

  src = fetchFromGitHub {
    owner = "fantix";
-    repo = pname;
+    repo = "aiocontextvars";
    rev = "v${version}";
-    sha256 = "0a2gmrm9csiknc8n3si67sgzffkydplh9d7ga1k87ygk2aj22mmk";
+    hash = "sha256-s1YhpBLz+YNmUO+0BOltfjr3nz4m6mERszNqlmquTyg=";
  };

  postPatch = ''
    substituteInPlace setup.py \
-      --replace "'pytest-runner'," ""
+      --replace-fail "'pytest-runner'," ""
  '';

+  build-system = [ setuptools ];
+
  nativeCheckInputs = [
    pytestCheckHook
    pytest-asyncio
--- a/pkgs/development/python-modules/aiohttp-jinja2/default.nix
+++ b/pkgs/development/python-modules/aiohttp-jinja2/default.nix
@ -6,12 +6,13 @@
 , pytest-aiohttp
 , pytestCheckHook
 , pythonOlder
+, setuptools
 }:

 buildPythonPackage rec {
  pname = "aiohttp-jinja2";
  version = "1.6";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -20,7 +21,11 @@ buildPythonPackage rec {
    hash = "sha256-o6f/UmTlvKUuiuVHu/0HYbcklSMNQ40FtsCRW+YZsOI=";
  };

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    aiohttp
    jinja2
  ];
@ -31,8 +36,8 @@ buildPythonPackage rec {
  ];

  postPatch = ''
-    substituteInPlace setup.cfg \
-      --replace " --cov=aiohttp_jinja2 --cov-report xml --cov-report html --cov-report term" ""
+    substituteInPlace pytest.ini \
+      --replace-fail "--cov=aiohttp_jinja2/ --cov=tests/ --cov-report term" ""
  '';

  pytestFlagsArray = [
@ -44,10 +49,6 @@ buildPythonPackage rec {
    "aiohttp_jinja2"
  ];

-  # Tests are outdated (1.5)
-  # pytest.PytestUnhandledCoroutineWarning: async def functions...
-  doCheck = false;
-
  meta = with lib; {
    description = "Jinja2 support for aiohttp";
    homepage = "https://github.com/aio-libs/aiohttp_jinja2";
--- a/pkgs/development/python-modules/aiohttp-openmetrics/default.nix
+++ b/pkgs/development/python-modules/aiohttp-openmetrics/default.nix
@ -4,12 +4,13 @@
 , aiohttp
 , prometheus-client
 , pythonOlder
+, setuptools
 }:

 buildPythonPackage rec {
  pname = "aiohttp-openmetrics";
  version = "0.0.12";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -18,7 +19,11 @@ buildPythonPackage rec {
    hash = "sha256-/ZRngcMlroCVTvIl+30DR4SI8LsSnTovuzg3YduWgWA=";
  };

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    aiohttp
    prometheus-client
  ];
--- a/pkgs/development/python-modules/aiokafka/default.nix
+++ b/pkgs/development/python-modules/aiokafka/default.nix
@ -9,6 +9,7 @@
 , packaging
 , python-snappy
 , pythonOlder
+, setuptools
 , zlib
 , zstandard
 }:
@ -16,32 +17,33 @@
 buildPythonPackage rec {
  pname = "aiokafka";
  version = "0.10.0";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

  src = fetchFromGitHub {
    owner = "aio-libs";
-    repo = pname;
+    repo = "aiokafka";
    rev = "refs/tags/v${version}";
    hash = "sha256-G9Q77nWUUW+hG/wm9z/S8gea4U1wHZdj7WdK2LsKBos=";
  };

-  nativeBuildInputs = [
+  build-system = [
    cython
+    setuptools
  ];

  buildInputs = [
    zlib
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    async-timeout
    kafka-python
    packaging
  ];

-  passthru.optional-dependencies = {
+  optional-dependencies = {
    snappy = [
      python-snappy
    ];
--- a/pkgs/development/python-modules/aiomqtt/default.nix
+++ b/pkgs/development/python-modules/aiomqtt/default.nix
@ -13,7 +13,7 @@
 buildPythonPackage rec {
  pname = "aiomqtt";
  version = "2.0.1";
-  format = "pyproject";
+  pyproject = true;

  disabled = pythonOlder "3.8";

@ -24,12 +24,12 @@ buildPythonPackage rec {
    hash = "sha256-bV1elEO1518LVLwNDN5pzjxRgcG34K1XUsK7fTw8h+8=";
  };

-  nativeBuildInputs = [
+  build-system = [
    poetry-core
    poetry-dynamic-versioning
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    paho-mqtt
    typing-extensions
  ];
--- a/pkgs/development/python-modules/aiomysql/default.nix
+++ b/pkgs/development/python-modules/aiomysql/default.nix
@ -4,6 +4,7 @@
 , fetchpatch
 , pymysql
 , pythonOlder
+, setuptools
 , setuptools-scm
 , wheel
 }:
@ -11,13 +12,13 @@
 buildPythonPackage rec {
  pname = "aiomysql";
  version = "0.2.0";
-  format = "pyproject";
+  pyproject = true;

  disabled = pythonOlder "3.7";

  src = fetchFromGitHub {
    owner = "aio-libs";
-    repo = pname;
+    repo = "aiomysql";
    rev = "refs/tags/v${version}";
    hash = "sha256-m/EgoBU3e+s3soXyYtACMDSjJfMLBOk/00qPtgawwQ8=";
  };
@ -33,6 +34,7 @@ buildPythonPackage rec {
  ];

  nativeBuildInputs = [
+    setuptools
    setuptools-scm
    wheel
  ];
--- a/pkgs/development/python-modules/aiorun/default.nix
+++ b/pkgs/development/python-modules/aiorun/default.nix
@ -12,13 +12,13 @@
 buildPythonPackage rec {
  pname = "aiorun";
  version = "2023.7.2";
-  format = "pyproject";
+  pyproject = true;

  disabled = pythonOlder "3.7";

  src = fetchFromGitHub {
    owner = "cjrh";
-    repo = pname;
+    repo = "aiorun";
    rev = "refs/tags/v${version}";
    hash = "sha256-3AGsT8IUNi5SZHBsBfd7akj8eQ+xb0mrR7ydIr3T8gs=";
  };
@ -31,11 +31,11 @@ buildPythonPackage rec {
    })
  ];

-  nativeBuildInputs = [
+  build-system = [
    flit-core
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    pygments
  ];

--- a/pkgs/development/python-modules/alembic/default.nix
+++ b/pkgs/development/python-modules/alembic/default.nix
@ -22,7 +22,7 @@
 buildPythonPackage rec {
  pname = "alembic";
  version = "1.13.1";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.6";

@ -31,11 +31,11 @@ buildPythonPackage rec {
    hash = "sha256-STLIVYv2jy7pK5u8uCGGccYnBk1bCJOUN69td9wF5ZU=";
  };

-  nativeBuildInputs = [
+  build-system = [
    setuptools
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    mako
    sqlalchemy
    typing-extensions
--- a/pkgs/development/python-modules/ansible-compat/default.nix
+++ b/pkgs/development/python-modules/ansible-compat/default.nix
@ -6,6 +6,7 @@
 , pytest-mock
 , pytestCheckHook
 , pyyaml
+, setuptools
 , setuptools-scm
 , subprocess-tee
 , pythonOlder
@ -14,7 +15,7 @@
 buildPythonPackage rec {
  pname = "ansible-compat";
  version = "4.1.11";
-  format = "pyproject";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -24,10 +25,11 @@ buildPythonPackage rec {
  };

  nativeBuildInputs = [
+    setuptools
    setuptools-scm
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    pyyaml
    subprocess-tee
  ];
--- a/pkgs/development/python-modules/ansible-kernel/default.nix
+++ b/pkgs/development/python-modules/ansible-kernel/default.nix
@ -2,6 +2,7 @@
 , buildPythonPackage
 , fetchPypi
 , writeText
+, setuptools
 , ipywidgets
 , six
 , docopt
@ -25,14 +26,16 @@ in
 buildPythonPackage rec {
  pname = "ansible-kernel";
  version = "1.0.0";
-  format = "setuptools";
+  pyproject = true;

  src = fetchPypi {
    inherit pname version;
    hash = "sha256-UJjm9FpmXSznXtaIR2rVv5YJS/H83FvRkNz09vwoe0c=";
  };

-  propagatedBuildInputs = [ ipywidgets six docopt tqdm jupyter psutil pyyaml ansible-runner ansible ];
+  build-system = [ setuptools ];
+
+  dependencies = [ ipywidgets six docopt tqdm jupyter psutil pyyaml ansible-runner ansible ];

  postPatch = ''
   # remove when merged
--- a/pkgs/development/python-modules/ansible-runner/default.nix
+++ b/pkgs/development/python-modules/ansible-runner/default.nix
@ -18,13 +18,14 @@
 , pythonOlder
 , python-daemon
 , pyyaml
+, setuptools
 , six
 }:

 buildPythonPackage rec {
  pname = "ansible-runner";
  version = "2.3.6";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.8";

@ -42,11 +43,12 @@ buildPythonPackage rec {
    })
  ];

-  nativeBuildInputs = [
+  build-system = [
+    setuptools
    pbr
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    ansible-core
    psutil
    pexpect
--- a/pkgs/development/python-modules/ansiwrap/default.nix
+++ b/pkgs/development/python-modules/ansiwrap/default.nix
@ -5,38 +5,39 @@
 , pytestCheckHook
 , pythonAtLeast
 , pythonOlder
+, setuptools
 , textwrap3
 }:

 buildPythonPackage rec {
  pname = "ansiwrap";
  version = "0.8.4";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7" || pythonAtLeast "3.12";

  src = fetchPypi {
    inherit pname version;
    extension = "zip";
-    sha256 = "ca0c740734cde59bf919f8ff2c386f74f9a369818cdc60efe94893d01ea8d9b7";
+    hash = "sha256-ygx0BzTN5Zv5Gfj/LDhvdPmjaYGM3GDv6UiT0B6o2bc=";
  };

  postPatch = ''
    # https://github.com/jonathaneunice/ansiwrap/issues/18
    substituteInPlace test/test_ansiwrap.py \
-      --replace "set(range(20, 120)).difference(LINE_LENGTHS)" "sorted(set(range(20, 120)).difference(LINE_LENGTHS))" \
-      --replace "set(range(120, 400)).difference(LINE_LENGTHS)" "sorted(set(range(120, 400)).difference(LINE_LENGTHS))"
+      --replace-fail "set(range(20, 120)).difference(LINE_LENGTHS)" "sorted(set(range(20, 120)).difference(LINE_LENGTHS))" \
+      --replace-fail "set(range(120, 400)).difference(LINE_LENGTHS)" "sorted(set(range(120, 400)).difference(LINE_LENGTHS))"
  '';

-  checkInputs = [
+  build-system = [ setuptools ];
+
+  dependencies = [ textwrap3 ];
+
+  nativeCheckInputs = [
    ansicolors
    pytestCheckHook
  ];

-  propagatedBuildInputs = [
-    textwrap3
-  ];
-
  pythonImportsCheck = [
    "ansiwrap"
  ];
--- a/pkgs/development/python-modules/apipkg/default.nix
+++ b/pkgs/development/python-modules/apipkg/default.nix
@ -9,16 +9,16 @@
 buildPythonPackage rec {
  pname = "apipkg";
  version = "3.0.2";
-  format = "pyproject";
+  pyproject = true;

  src = fetchFromGitHub {
    owner = "pytest-dev";
-    repo = pname;
+    repo = "apipkg";
    rev = "refs/tags/v${version}";
    hash = "sha256-ANLD7fUMKN3RmAVjVkcpwUH6U9ASalXdwKtPpoC8Urs=";
  };

-  nativeBuildInputs = [
+  build-system = [
    hatch-vcs
    hatchling
  ];
--- a/pkgs/development/python-modules/apprise/default.nix
+++ b/pkgs/development/python-modules/apprise/default.nix
@ -15,12 +15,13 @@
 , pyyaml
 , requests
 , requests-oauthlib
+, setuptools
 }:

 buildPythonPackage rec {
  pname = "apprise";
  version = "1.7.6";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -33,6 +34,11 @@ buildPythonPackage rec {
    installShellFiles
  ];

+  build-system = [
+    babel
+    setuptools
+  ];
+
  propagatedBuildInputs = [
    click
    cryptography
@ -43,7 +49,6 @@ buildPythonPackage rec {
  ];

  nativeCheckInputs = [
-    babel
    gntp
    paho-mqtt
    pytest-mock
--- a/pkgs/development/python-modules/apscheduler/default.nix
+++ b/pkgs/development/python-modules/apscheduler/default.nix
@ -19,7 +19,7 @@
 buildPythonPackage rec {
  pname = "apscheduler";
  version = "3.10.4";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -29,11 +29,12 @@ buildPythonPackage rec {
    hash = "sha256-5t8HGyfZvomOSGvHlAp75QtK8unafAjwdEqW1L1M70o=";
  };

-  buildInputs = [
+  build-system = [
+    setuptools
    setuptools-scm
  ];

-  propagatedBuildInputs = [
+  dependencies = [
    pytz
    setuptools
    six
@ -51,7 +52,7 @@ buildPythonPackage rec {

  postPatch = ''
    substituteInPlace setup.cfg \
-      --replace " --cov --tb=short" ""
+      --replace-fail " --cov --tb=short" ""
  '';

  disabledTests = [
--- a/pkgs/development/python-modules/asana/default.nix
+++ b/pkgs/development/python-modules/asana/default.nix
@ -1,18 +1,19 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, pytestCheckHook
 , pythonOlder
-, requests
-, requests-oauthlib
-, responses
+, setuptools
+, certifi
 , six
+, python-dateutil
+, urllib3
+, pytestCheckHook
 }:

 buildPythonPackage rec {
  pname = "asana";
  version = "5.0.3";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -23,15 +24,17 @@ buildPythonPackage rec {
    hash = "sha256-9F63DvwMh9NwlTqFuhiXfgRRRxAFjjRYmYzsuOhlQJ0=";
  };

-  propagatedBuildInputs = [
-    requests
-    requests-oauthlib
+  build-system = [ setuptools ];
+
+  dependencies = [
+    certifi
    six
+    python-dateutil
+    urllib3
  ];

  nativeCheckInputs = [
    pytestCheckHook
-    responses
  ];

  pythonImportsCheck = [
--- a/pkgs/development/python-modules/asciitree/default.nix
+++ b/pkgs/development/python-modules/asciitree/default.nix
@ -1,28 +1,29 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, pytest
+, setuptools
+, pytestCheckHook
 }:

 buildPythonPackage rec {
  pname = "asciitree";
  version = "0.3.3";
-  format = "setuptools";
+  pyproject = true;

  src = fetchFromGitHub {
    owner = "mbr";
-    repo = pname;
+    repo = "asciitree";
    rev = version;
-    sha256 = "071wlpyi8pa262sj9xdy0zbj163z84dasxad363z3sfndqxw78h1";
+    hash = "sha256-AaLDO27W6fGHGU11rRpBf5gg1we+9SS1MEJdFP2lPBw=";
  };

-  nativeCheckInputs = [
-    pytest
+  build-system = [
+    setuptools
  ];

-  checkPhase = ''
-    pytest
-  '';
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];

  meta = with lib; {
    description = "Draws ASCII trees";
--- a/pkgs/development/python-modules/ase/default.nix
+++ b/pkgs/development/python-modules/ase/default.nix
@ -2,18 +2,24 @@
 , fetchPypi
 , buildPythonPackage
 , isPy27
+, pythonAtLeast
+, setuptools
 , numpy
 , scipy
 , matplotlib
 , flask
 , pillow
 , psycopg2
+, pytestCheckHook
+, pytest-mock
+, pytest-xdist
 }:

 buildPythonPackage rec {
  pname = "ase";
  version = "3.22.1";
-  format = "setuptools";
+  pyproject = true;
+
  disabled = isPy27;

  src = fetchPypi {
@ -21,15 +27,29 @@ buildPythonPackage rec {
    hash = "sha256-AE32sOoEsRFMeQ+t/kXUEl6w5TElxmqTQlr4U9gqtDI=";
  };

-  propagatedBuildInputs = [ numpy scipy matplotlib flask pillow psycopg2 ];
+  build-system = [ setuptools ];

-  checkPhase = ''
-    $out/bin/ase test
+  dependencies = [ numpy scipy matplotlib flask pillow psycopg2 ];
+
+  nativeCheckInputs = [ pytestCheckHook pytest-mock pytest-xdist ];
+
+  disabledTests = [
+    "test_fundamental_params"
+    "test_ase_bandstructure"
+    "test_imports"
+    "test_units"
+    "test_favicon"
+    "test_vibrations_methods" # missing attribute
+    "test_jmol_roundtrip" # missing attribute
+  ]
+  ++ lib.optionals (pythonAtLeast "3.12") [
+    "test_info_calculators"
+  ];
+
+  preCheck = ''
+    export PATH="$out/bin:$PATH"
  '';

-  # tests just hang most likely due to something with subprocesses and cli
-  doCheck = false;
-
  pythonImportsCheck = [ "ase" ];

  meta = with lib; {
--- a/pkgs/development/python-modules/aspell-python/default.nix
+++ b/pkgs/development/python-modules/aspell-python/default.nix
@ -6,12 +6,13 @@
 , isPy27
 , pytestCheckHook
 , pythonAtLeast
+, setuptools
 }:

 buildPythonPackage rec {
  pname = "aspell-python";
  version = "1.15";
-  format = "setuptools";
+  pyproject = true;

  disabled = isPy27;

@ -22,6 +23,10 @@ buildPythonPackage rec {
    hash = "sha256-IEKRDmQY5fOH9bQk0dkUAy7UzpBOoZW4cNtVvLMcs40=";
  };

+  build-system = [
+    setuptools
+  ];
+
  buildInputs = [
    aspell
  ];
--- a/pkgs/development/python-modules/asyncssh/default.nix
+++ b/pkgs/development/python-modules/asyncssh/default.nix
@ -1,5 +1,4 @@
 { lib
-, stdenv
 , bcrypt
 , buildPythonPackage
 , cryptography
@ -15,13 +14,14 @@
 , pytestCheckHook
 , python-pkcs11
 , pythonOlder
+, setuptools
 , typing-extensions
 }:

 buildPythonPackage rec {
  pname = "asyncssh";
  version = "2.14.2";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.6";

@ -30,14 +30,19 @@ buildPythonPackage rec {
    hash = "sha256-6Va/iYjQega6MwX2YE4mH0ygFMSiMvCHPxx2kvvjz8I=";
  };

-  propagatedBuildInputs = [
+  build-system = [ setuptools ];
+
+  dependencies = [
    cryptography
-    libsodium
    nettle
    typing-extensions
  ];

-  passthru.optional-dependencies = {
+  buildInputs = [
+    libsodium
+  ];
+
+  optional-dependencies = {
    bcrypt = [
      bcrypt
    ];
@ -64,7 +69,7 @@ buildPythonPackage rec {
    openssh
    openssl
    pytestCheckHook
-  ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
+  ] ++ lib.flatten (builtins.attrValues optional-dependencies);

  patches = [
    # Reverts https://github.com/ronf/asyncssh/commit/4b3dec994b3aa821dba4db507030b569c3a32730
--- a/pkgs/development/python-modules/atomman/default.nix
+++ b/pkgs/development/python-modules/atomman/default.nix
@ -22,10 +22,10 @@
 , pythonRelaxDepsHook
 }:

-buildPythonPackage rec {
-  version = "unstable-2023-07-28";
+buildPythonPackage {
  pname = "atomman";
-  format = "pyproject";
+  version = "1.4.6-unstable-2023-07-28";
+  pyproject = true;

  disabled = pythonOlder "3.7";

@ -36,14 +36,16 @@ buildPythonPackage rec {
    hash = "sha256-WfB+OY61IPprT6OCVHl8VA60p7lLVkRGuyYX+nm7bbA=";
  };

-  nativeBuildInputs = [
+  nativeBuildInputs = [ pythonRelaxDepsHook ];
+
+  build-system = [
    setuptools
    wheel
-    pythonRelaxDepsHook
+    numpy
+    cython
  ];

-  propagatedBuildInputs = [
-    cython
+  dependencies = [
    datamodeldict
    matplotlib
    numericalunits
--- a/pkgs/development/python-modules/atsim-potentials/default.nix
+++ b/pkgs/development/python-modules/atsim-potentials/default.nix
@ -1,6 +1,8 @@
 { lib
 , buildPythonPackage
+, pythonAtLeast
 , fetchFromGitHub
+, setuptools
 , configparser
 , pyparsing
 , pytestCheckHook
@ -14,23 +16,22 @@
 }:

 buildPythonPackage rec {
-  version = "0.4.1";
-  format = "setuptools";
  pname = "atsim-potentials";
+  version = "0.4.1";
+  pyproject = true;

  src = fetchFromGitHub {
    owner = "mjdrushton";
-    repo = pname;
+    repo = "atsim-potentials";
    rev = "refs/tags/${version}";
    hash = "sha256-G7lNqwEUwAT0f7M2nUTCxpXOAl6FWKlh7tcsvbur1eM=";
  };

-  postPatch = ''
-    # Remove conflicting openpyxl dependency version check
-    sed -i '/openpyxl==2.6.4/d' setup.py
-  '';
+  build-system = [
+    setuptools
+  ];

-  propagatedBuildInputs = [
+  dependencies = [
    cexprtk
    configparser
    future
@ -46,10 +47,21 @@ buildPythonPackage rec {
    pytestCheckHook
  ];

+  # these files try to import `distutils` removed in Python 3.12
+  disabledTestPaths = lib.optionals (pythonAtLeast "3.12") [
+    "tests/config/test_configuration_eam.py"
+    "tests/config/test_configuration_eam_fs.py"
+    "tests/config/test_configuration_pair.py"
+    "tests/test_dlpoly_writeTABEAM.py"
+    "tests/test_documentation_examples.py"
+    "tests/test_eam_adp_writer.py"
+    "tests/test_gulp_writer.py"
+    "tests/test_lammpsWriteEAM.py"
+  ];
+
  disabledTests = [
    # Missing lammps executable
    "eam_tabulate_example2TestCase"
-    "test_pymath"
  ];

  pythonImportsCheck = [ "atsim.potentials" ];
--- a/pkgs/development/python-modules/aubio/default.nix
+++ b/pkgs/development/python-modules/aubio/default.nix
@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, setuptools
 , numpy
 , pytestCheckHook
 , stdenv
@ -10,18 +11,22 @@
 buildPythonPackage rec {
  pname = "aubio";
  version = "0.4.9";
-  format = "setuptools";
+  pyproject = true;

  src = fetchFromGitHub {
-    owner = pname;
-    repo = pname;
+    owner = "aubio";
+    repo = "aubio";
    rev = version;
-    sha256 = "0fhxikvlr010nbh02g455d5y8bq6j5yw180cdh4gsd0hb43y3z26";
+    hash = "sha256-RvzhB1kQNP0IbAygwH2RBi/kSyuFPAHgsiCATPeMHTo=";
  };

  buildInputs = lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Accelerate AudioToolbox CoreVideo CoreGraphics ]);

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    numpy
  ];

--- a/pkgs/development/python-modules/audiotools/default.nix
+++ b/pkgs/development/python-modules/audiotools/default.nix
@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, setuptools
 , stdenv
 , AudioToolbox
 , AudioUnit
@ -10,7 +11,9 @@
 buildPythonPackage rec {
  pname = "audiotools";
  version = "3.1.1";
-  format = "setuptools";
+  pyproject = true;
+
+  build-system = [ setuptools ];

  buildInputs = lib.optionals stdenv.isDarwin [
    AudioToolbox
--- a/pkgs/development/python-modules/autobahn/default.nix
+++ b/pkgs/development/python-modules/autobahn/default.nix
@ -34,6 +34,7 @@
  # , pytrie
 , rlp
 , service-identity
+, setuptools
 , spake2
 , twisted
 , txaio
@ -49,7 +50,7 @@
 buildPythonPackage rec {
  pname = "autobahn";
  version = "23.6.2";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.9";

@ -60,10 +61,14 @@ buildPythonPackage rec {

  postPatch = ''
    substituteInPlace setup.py \
-      --replace "pytest>=2.8.6,<3.3.0" "pytest"
+      --replace-fail "pytest>=2.8.6,<3.3.0" "pytest"
  '';

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    cryptography
    hyperlink
    pynacl
@ -74,9 +79,9 @@ buildPythonPackage rec {
    mock
    pytest-asyncio_0_21
    pytestCheckHook
-  ] ++ passthru.optional-dependencies.scram
-  ++ passthru.optional-dependencies.serialization
-  ++ passthru.optional-dependencies.xbr;
+  ] ++ optional-dependencies.scram
+  ++ optional-dependencies.serialization
+  ++ optional-dependencies.xbr;

  preCheck = ''
    # Run asyncio tests (requires twisted)
@ -91,7 +96,7 @@ buildPythonPackage rec {
    "autobahn"
  ];

-  passthru.optional-dependencies = rec {
+  optional-dependencies = rec {
    all = accelerate ++ compress ++ encryption ++ nvx ++ serialization ++ scram ++ twisted ++ ui ++ xbr;
    accelerate = [ /* wsaccel */ ];
    compress = [ python-snappy ];
--- a/pkgs/tools/admin/aws-mfa/default.nix
+++ b/pkgs/tools/admin/aws-mfa/default.nix
@ -2,13 +2,14 @@
 , buildPythonApplication
 , fetchFromGitHub
 , fetchpatch
+, setuptools
 , boto3
 }:

 buildPythonApplication rec {
  pname = "aws-mfa";
  version = "0.0.12";
-  format = "setuptools";
+  pyproject = true;

  src = fetchFromGitHub {
    owner = "broamski";
@ -26,7 +27,11 @@ buildPythonApplication rec {
    })
  ];

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    boto3
  ];

--- a/pkgs/tools/networking/apc-temp-fetch/default.nix
+++ b/pkgs/tools/networking/apc-temp-fetch/default.nix
@ -3,12 +3,13 @@
 , fetchPypi
 , pythonOlder
 , requests
+, setuptools
 }:

 buildPythonApplication rec {
  pname = "apc-temp-fetch";
  version = "0.0.2";
-  format = "setuptools";
+  pyproject = true;

  disabled = pythonOlder "3.6";

@ -18,7 +19,11 @@ buildPythonApplication rec {
    hash = "sha256-lXGj/xrOkdMMYvuyVVSCojjQlzISFUT14VTn//iOARo=";
  };

-  propagatedBuildInputs = [
+  build-system = [
+    setuptools
+  ];
+
+  dependencies = [
    requests
  ];