toil: 5.7.1 -> 5.12.0 (#273274)
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@ -6,21 +6,16 @@
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python3.pkgs.buildPythonApplication rec {
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python3.pkgs.buildPythonApplication rec {
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pname = "toil";
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pname = "toil";
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version = "5.7.1";
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version = "5.12.0";
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format = "setuptools";
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format = "setuptools";
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src = fetchFromGitHub {
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src = fetchFromGitHub {
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owner = "DataBiosphere";
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owner = "DataBiosphere";
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repo = pname;
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repo = pname;
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rev = "refs/tags/releases/${version}";
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rev = "refs/tags/releases/${version}";
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hash = "sha256-m+XvNyzd0ly2YqKhgxezgGaCXLs3CmupJMnp5RIZqNI=";
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hash = "sha256-cTpbQo9tPZifUO59vbnIa3XUinFJ2/5Slfe4yszglFM=";
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};
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};
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postPatch = ''
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substituteInPlace requirements.txt \
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--replace "docker>=3.7.2, <6" "docker"
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'';
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propagatedBuildInputs = with python3.pkgs; [
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propagatedBuildInputs = with python3.pkgs; [
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addict
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addict
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dill
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dill
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@ -42,7 +37,6 @@ python3.pkgs.buildPythonApplication rec {
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boto
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boto
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botocore
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botocore
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flask
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flask
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mypy-boto3-s3
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pytestCheckHook
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pytestCheckHook
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stubserver
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stubserver
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]);
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]);
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@ -63,6 +57,10 @@ python3.pkgs.buildPythonApplication rec {
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"src/toil/test/src"
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"src/toil/test/src"
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"src/toil/test/wdl"
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"src/toil/test/wdl"
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"src/toil/test/utils/utilsTest.py"
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"src/toil/test/utils/utilsTest.py"
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"src/toil/test/cwl/cwlTest.py"
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"src/toil/test/lib/test_ec2.py"
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"src/toil/test/lib/aws/test_iam.py"
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"src/toil/test/lib/aws/test_s3.py"
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];
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];
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disabledTests = [
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disabledTests = [
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