Merge pull request #306656 from ShamrockLee/apptainer-format
apptainer, singularity: format Nix expression according to Nix RFC 166
This commit is contained in:
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5e05a5e3c9
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@ -1,4 +1,9 @@
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{ config, pkgs, lib, ... }:
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{
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config,
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pkgs,
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lib,
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...
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}:
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with lib;
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let
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@ -12,9 +17,7 @@ in
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Whether to install Singularity/Apptainer with system-level overriding such as SUID support.
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'';
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};
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package = mkPackageOption pkgs "singularity" {
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example = "apptainer";
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};
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package = mkPackageOption pkgs "singularity" { example = "apptainer"; };
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packageOverriden = mkOption {
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type = types.nullOr types.package;
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default = null;
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@ -75,17 +78,19 @@ in
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};
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config = mkIf cfg.enable {
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programs.singularity.packageOverriden = (cfg.package.override (
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optionalAttrs cfg.enableExternalLocalStateDir {
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externalLocalStateDir = "/var/lib";
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} // optionalAttrs cfg.enableFakeroot {
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newuidmapPath = "/run/wrappers/bin/newuidmap";
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newgidmapPath = "/run/wrappers/bin/newgidmap";
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} // optionalAttrs cfg.enableSuid {
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enableSuid = true;
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starterSuidPath = "/run/wrappers/bin/${cfg.package.projectName}-suid";
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}
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));
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programs.singularity.packageOverriden = (
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cfg.package.override (
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optionalAttrs cfg.enableExternalLocalStateDir { externalLocalStateDir = "/var/lib"; }
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// optionalAttrs cfg.enableFakeroot {
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newuidmapPath = "/run/wrappers/bin/newuidmap";
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newgidmapPath = "/run/wrappers/bin/newgidmap";
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}
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// optionalAttrs cfg.enableSuid {
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enableSuid = true;
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starterSuidPath = "/run/wrappers/bin/${cfg.package.projectName}-suid";
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}
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)
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);
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environment.systemPackages = [ cfg.packageOverriden ];
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security.wrappers."${cfg.packageOverriden.projectName}-suid" = mkIf cfg.enableSuid {
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setuid = true;
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@ -97,5 +102,4 @@ in
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"d /var/lib/${cfg.packageOverriden.projectName}/mnt/session 0770 root root -"
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];
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};
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}
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@ -1,107 +1,111 @@
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# Configurations that should only be overrided by
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# overrideAttrs
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{ pname
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, version
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, src
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, projectName # "apptainer" or "singularity"
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, vendorHash ? null
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, deleteVendor ? false
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, proxyVendor ? false
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, extraConfigureFlags ? [ ]
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, extraDescription ? ""
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, extraMeta ? { }
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{
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pname,
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version,
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src,
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projectName, # "apptainer" or "singularity"
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vendorHash ? null,
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deleteVendor ? false,
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proxyVendor ? false,
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extraConfigureFlags ? [ ],
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extraDescription ? "",
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extraMeta ? { },
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}:
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let
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# Workaround for vendor-related attributes not overridable (#86349)
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# should be removed when the issue is resolved
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_defaultGoVendorArgs = {
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inherit
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vendorHash
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deleteVendor
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proxyVendor
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;
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inherit vendorHash deleteVendor proxyVendor;
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};
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in
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{ lib
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, buildGoModule
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, runCommandLocal
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{
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lib,
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buildGoModule,
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runCommandLocal,
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substituteAll,
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# Native build inputs
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, addDriverRunpath
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, makeWrapper
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, pkg-config
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, util-linux
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, which
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addDriverRunpath,
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makeWrapper,
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pkg-config,
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util-linux,
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which,
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# Build inputs
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, bash
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, callPackage
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, conmon
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, coreutils
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, cryptsetup
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, e2fsprogs
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, fakeroot
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, fuse2fs ? e2fsprogs.fuse2fs
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, go
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, gpgme
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, libseccomp
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, libuuid
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bash,
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callPackage,
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conmon,
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coreutils,
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cryptsetup,
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e2fsprogs,
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fakeroot,
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fuse2fs ? e2fsprogs.fuse2fs,
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go,
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gpgme,
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libseccomp,
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libuuid,
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# This is for nvidia-container-cli
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, nvidia-docker
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, openssl
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, squashfsTools
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, squashfuse
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nvidia-docker,
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openssl,
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squashfsTools,
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squashfuse,
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# Test dependencies
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, singularity-tools
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, cowsay
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, hello
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singularity-tools,
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cowsay,
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hello,
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# Overridable configurations
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, enableNvidiaContainerCli ? true
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enableNvidiaContainerCli ? true,
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# --nvccli currently requires extra privileges:
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# https://github.com/apptainer/apptainer/issues/1893#issuecomment-1881240800
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, forceNvcCli ? false
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forceNvcCli ? false,
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# Compile with seccomp support
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# SingularityCE 3.10.0 and above requires explicit --without-seccomp when libseccomp is not available.
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, enableSeccomp ? true
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enableSeccomp ? true,
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# Whether the configure script treat SUID support as default
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# When equal to enableSuid, it supress the --with-suid / --without-suid build flag
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# It can be set to `null` to always pass either --with-suid or --without-suided
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# Type: null or boolean
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, defaultToSuid ? true
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defaultToSuid ? true,
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# Whether to compile with SUID support
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, enableSuid ? false
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, starterSuidPath ? null
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, substituteAll
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enableSuid ? false,
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starterSuidPath ? null,
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# newuidmapPath and newgidmapPath are to support --fakeroot
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# where those SUID-ed executables are unavailable from the FHS system PATH.
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# Path to SUID-ed newuidmap executable
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, newuidmapPath ? null
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newuidmapPath ? null,
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# Path to SUID-ed newgidmap executable
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, newgidmapPath ? null
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newgidmapPath ? null,
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# External LOCALSTATEDIR
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, externalLocalStateDir ? null
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externalLocalStateDir ? null,
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# Remove the symlinks to `singularity*` when projectName != "singularity"
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, removeCompat ? false
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removeCompat ? false,
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# Workaround #86349
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# should be removed when the issue is resolved
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, vendorHash ? _defaultGoVendorArgs.vendorHash
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, deleteVendor ? _defaultGoVendorArgs.deleteVendor
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, proxyVendor ? _defaultGoVendorArgs.proxyVendor
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vendorHash ? _defaultGoVendorArgs.vendorHash,
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deleteVendor ? _defaultGoVendorArgs.deleteVendor,
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proxyVendor ? _defaultGoVendorArgs.proxyVendor,
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}:
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let
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defaultPathOriginal = "/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin";
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privileged-un-utils = if ((newuidmapPath == null) && (newgidmapPath == null)) then null else
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(runCommandLocal "privileged-un-utils" { } ''
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mkdir -p "$out/bin"
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ln -s ${lib.escapeShellArg newuidmapPath} "$out/bin/newuidmap"
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ln -s ${lib.escapeShellArg newgidmapPath} "$out/bin/newgidmap"
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'');
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privileged-un-utils =
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if ((newuidmapPath == null) && (newgidmapPath == null)) then
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null
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else
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(runCommandLocal "privileged-un-utils" { } ''
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mkdir -p "$out/bin"
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ln -s ${lib.escapeShellArg newuidmapPath} "$out/bin/newuidmap"
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ln -s ${lib.escapeShellArg newgidmapPath} "$out/bin/newgidmap"
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'');
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in
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(buildGoModule {
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inherit pname version src;
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patches = lib.optionals (projectName == "apptainer") [
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(substituteAll { src = ./apptainer/0001-ldCache-patch-for-driverLink.patch; inherit (addDriverRunpath) driverLink; })
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(substituteAll {
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src = ./apptainer/0001-ldCache-patch-for-driverLink.patch;
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inherit (addDriverRunpath) driverLink;
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})
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];
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# Override vendorHash with the output got from
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@ -138,29 +142,36 @@ in
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# apptainer/apptainer: https://github.com/apptainer/apptainer/blob/main/dist/debian/control
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# sylabs/singularity: https://github.com/sylabs/singularity/blob/main/debian/control
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buildInputs = [
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bash # To patch /bin/sh shebangs.
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conmon
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cryptsetup
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gpgme
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libuuid
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openssl
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squashfsTools # Required at build time by SingularityCE
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]
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++ lib.optional enableNvidiaContainerCli nvidia-docker
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++ lib.optional enableSeccomp libseccomp
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;
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buildInputs =
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[
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bash # To patch /bin/sh shebangs.
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conmon
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cryptsetup
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gpgme
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libuuid
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openssl
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squashfsTools # Required at build time by SingularityCE
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]
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# Optional dependencies.
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# Formatting: Optional dependencies are likely to increase.
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# Don't squash them into the same line.
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++ lib.optional enableNvidiaContainerCli nvidia-docker
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++ lib.optional enableSeccomp libseccomp;
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configureScript = "./mconfig";
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configureFlags = [
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"--localstatedir=${if externalLocalStateDir != null then externalLocalStateDir else "${placeholder "out"}/var/lib"}"
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"--runstatedir=/var/run"
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]
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++ lib.optional (!enableSeccomp) "--without-seccomp"
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++ lib.optional (enableSuid != defaultToSuid) (if enableSuid then "--with-suid" else "--without-suid")
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++ extraConfigureFlags
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;
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configureFlags =
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[
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"--localstatedir=${
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if externalLocalStateDir != null then externalLocalStateDir else "${placeholder "out"}/var/lib"
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}"
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"--runstatedir=/var/run"
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]
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++ lib.optional (!enableSeccomp) "--without-seccomp"
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++ lib.optional (enableSuid != defaultToSuid) (
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if enableSuid then "--with-suid" else "--without-suid"
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)
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++ extraConfigureFlags;
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# causes redefinition of _FORTIFY_SOURCE
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hardeningDisable = [ "fortify3" ];
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@ -177,9 +188,7 @@ in
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privileged-un-utils
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squashfsTools # mksquashfs unsquashfs # Make / unpack squashfs image
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squashfuse # squashfuse_ll squashfuse # Mount (without unpacking) a squashfs image without privileges
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]
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++ lib.optional enableNvidiaContainerCli nvidia-docker
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;
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] ++ lib.optional enableNvidiaContainerCli nvidia-docker;
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postPatch = ''
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if [[ ! -e .git || ! -e VERSION ]]; then
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@ -249,70 +258,86 @@ in
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rm "$file"
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done
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''}
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${lib.optionalString enableSuid (lib.warnIf (starterSuidPath == null) "${projectName}: Null starterSuidPath when enableSuid produces non-SUID-ed starter-suid and run-time permission denial." ''
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chmod +x $out/libexec/${projectName}/bin/starter-suid
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'')}
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${lib.optionalString enableSuid (
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lib.warnIf (starterSuidPath == null)
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"${projectName}: Null starterSuidPath when enableSuid produces non-SUID-ed starter-suid and run-time permission denial."
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''
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chmod +x $out/libexec/${projectName}/bin/starter-suid
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''
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)}
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${lib.optionalString (enableSuid && (starterSuidPath != null)) ''
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mv "$out"/libexec/${projectName}/bin/starter-suid{,.orig}
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ln -s ${lib.escapeShellArg starterSuidPath} "$out/libexec/${projectName}/bin/starter-suid"
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''}
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'';
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meta = with lib; {
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description = "Application containers for linux" + extraDescription;
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longDescription = ''
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Singularity (the upstream) renamed themselves to Apptainer
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to distinguish themselves from a fork made by Sylabs Inc.. See
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meta =
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with lib;
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{
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description = "Application containers for linux" + extraDescription;
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longDescription = ''
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Singularity (the upstream) renamed themselves to Apptainer
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to distinguish themselves from a fork made by Sylabs Inc.. See
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https://sylabs.io/2021/05/singularity-community-edition
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https://apptainer.org/news/community-announcement-20211130
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'';
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license = licenses.bsd3;
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platforms = platforms.linux;
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maintainers = with maintainers; [ jbedo ShamrockLee ];
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mainProgram = projectName;
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} // extraMeta;
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}).overrideAttrs (finalAttrs: prevAttrs: {
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passthru = prevAttrs.passthru or { } // {
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tests = {
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image-hello-cowsay = singularity-tools.buildImage {
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name = "hello-cowsay";
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contents = [ hello cowsay ];
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singularity = finalAttrs.finalPackage;
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};
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};
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gpuChecks = lib.optionalAttrs (projectName == "apptainer") {
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# Should be in tests, but Ofborg would skip image-hello-cowsay because
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# saxpy is unfree.
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image-saxpy = callPackage
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({ singularity-tools, cudaPackages }:
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singularity-tools.buildImage {
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name = "saxpy";
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contents = [ cudaPackages.saxpy ];
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memSize = 2048;
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diskSize = 2048;
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https://sylabs.io/2021/05/singularity-community-edition
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https://apptainer.org/news/community-announcement-20211130
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'';
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license = licenses.bsd3;
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platforms = platforms.linux;
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maintainers = with maintainers; [
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jbedo
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ShamrockLee
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];
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mainProgram = projectName;
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}
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// extraMeta;
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}).overrideAttrs
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(
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finalAttrs: prevAttrs: {
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passthru = prevAttrs.passthru or { } // {
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tests = {
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image-hello-cowsay = singularity-tools.buildImage {
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name = "hello-cowsay";
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contents = [
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hello
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cowsay
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];
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singularity = finalAttrs.finalPackage;
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})
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{ };
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saxpy =
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callPackage
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({ runCommand, writeShellScriptBin }:
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};
|
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};
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gpuChecks = lib.optionalAttrs (projectName == "apptainer") {
|
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# Should be in tests, but Ofborg would skip image-hello-cowsay because
|
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# saxpy is unfree.
|
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image-saxpy = callPackage (
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{ singularity-tools, cudaPackages }:
|
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singularity-tools.buildImage {
|
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name = "saxpy";
|
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contents = [ cudaPackages.saxpy ];
|
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memSize = 2048;
|
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diskSize = 2048;
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singularity = finalAttrs.finalPackage;
|
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}
|
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) { };
|
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saxpy = callPackage (
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{ runCommand, writeShellScriptBin }:
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let
|
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unwrapped = writeShellScriptBin "apptainer-cuda-saxpy"
|
||||
''
|
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${lib.getExe finalAttrs.finalPackage} exec --nv $@ ${finalAttrs.passthru.gpuChecks.image-saxpy} saxpy
|
||||
'';
|
||||
unwrapped = writeShellScriptBin "apptainer-cuda-saxpy" ''
|
||||
${lib.getExe finalAttrs.finalPackage} exec --nv $@ ${finalAttrs.passthru.gpuChecks.image-saxpy} saxpy
|
||||
'';
|
||||
in
|
||||
runCommand "run-apptainer-cuda-saxpy"
|
||||
{
|
||||
requiredSystemFeatures = [ "cuda" ];
|
||||
nativeBuildInputs = [ unwrapped ];
|
||||
passthru = { inherit unwrapped; };
|
||||
passthru = {
|
||||
inherit unwrapped;
|
||||
};
|
||||
}
|
||||
''
|
||||
apptainer-cuda-saxpy
|
||||
'')
|
||||
{ };
|
||||
};
|
||||
};
|
||||
})
|
||||
''
|
||||
) { };
|
||||
};
|
||||
};
|
||||
}
|
||||
)
|
||||
|
|
|
|||
|
|
@ -1,89 +1,98 @@
|
|||
{ callPackage
|
||||
, fetchFromGitHub
|
||||
, nixos
|
||||
, conmon
|
||||
{
|
||||
callPackage,
|
||||
fetchFromGitHub,
|
||||
nixos,
|
||||
conmon,
|
||||
}:
|
||||
let
|
||||
apptainer = callPackage
|
||||
(import ./generic.nix rec {
|
||||
pname = "apptainer";
|
||||
version = "1.3.1";
|
||||
projectName = "apptainer";
|
||||
apptainer =
|
||||
callPackage
|
||||
(import ./generic.nix rec {
|
||||
pname = "apptainer";
|
||||
version = "1.3.1";
|
||||
projectName = "apptainer";
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "apptainer";
|
||||
repo = "apptainer";
|
||||
rev = "refs/tags/v${version}";
|
||||
hash = "sha256-XhJecINx8jC6pRzIoM4nC6Aunj40xL8EmYIA4UizfAY=";
|
||||
src = fetchFromGitHub {
|
||||
owner = "apptainer";
|
||||
repo = "apptainer";
|
||||
rev = "refs/tags/v${version}";
|
||||
hash = "sha256-XhJecINx8jC6pRzIoM4nC6Aunj40xL8EmYIA4UizfAY=";
|
||||
};
|
||||
|
||||
# Update by running
|
||||
# nix-prefetch -E "{ sha256 }: ((import ./. { }).apptainer.override { vendorHash = sha256; }).goModules"
|
||||
# at the root directory of the Nixpkgs repository
|
||||
vendorHash = "sha256-MXW1U13uDRAx4tqZvqsuJvoD22nEL2gcxiGaa/6zwU0=";
|
||||
|
||||
extraDescription = " (previously known as Singularity)";
|
||||
extraMeta.homepage = "https://apptainer.org";
|
||||
})
|
||||
{
|
||||
# Apptainer doesn't depend on conmon
|
||||
conmon = null;
|
||||
|
||||
# Apptainer builders require explicit --with-suid / --without-suid flag
|
||||
# when building on a system with disabled unprivileged namespace.
|
||||
# See https://github.com/NixOS/nixpkgs/pull/215690#issuecomment-1426954601
|
||||
defaultToSuid = null;
|
||||
};
|
||||
|
||||
# Update by running
|
||||
# nix-prefetch -E "{ sha256 }: ((import ./. { }).apptainer.override { vendorHash = sha256; }).goModules"
|
||||
# at the root directory of the Nixpkgs repository
|
||||
vendorHash = "sha256-MXW1U13uDRAx4tqZvqsuJvoD22nEL2gcxiGaa/6zwU0=";
|
||||
singularity =
|
||||
callPackage
|
||||
(import ./generic.nix rec {
|
||||
pname = "singularity-ce";
|
||||
version = "4.1.2";
|
||||
projectName = "singularity";
|
||||
|
||||
extraDescription = " (previously known as Singularity)";
|
||||
extraMeta.homepage = "https://apptainer.org";
|
||||
})
|
||||
{
|
||||
# Apptainer doesn't depend on conmon
|
||||
conmon = null;
|
||||
src = fetchFromGitHub {
|
||||
owner = "sylabs";
|
||||
repo = "singularity";
|
||||
rev = "refs/tags/v${version}";
|
||||
hash = "sha256-/KTDdkCMkZ5hO+VYHzw9vB8FDWxg7PS1yb2waRJQngY=";
|
||||
};
|
||||
|
||||
# Apptainer builders require explicit --with-suid / --without-suid flag
|
||||
# when building on a system with disabled unprivileged namespace.
|
||||
# See https://github.com/NixOS/nixpkgs/pull/215690#issuecomment-1426954601
|
||||
defaultToSuid = null;
|
||||
};
|
||||
# Update by running
|
||||
# nix-prefetch -E "{ sha256 }: ((import ./. { }).singularity.override { vendorHash = sha256; }).goModules"
|
||||
# at the root directory of the Nixpkgs repository
|
||||
vendorHash = "sha256-4Nxj2PzZmFdvouWKyXLFDk8iuRhFuvyPW/+VRTw75Zw=";
|
||||
|
||||
singularity = callPackage
|
||||
(import ./generic.nix rec {
|
||||
pname = "singularity-ce";
|
||||
version = "4.1.2";
|
||||
projectName = "singularity";
|
||||
# Do not build conmon and squashfuse from the Git submodule sources,
|
||||
# Use Nixpkgs provided version
|
||||
extraConfigureFlags = [
|
||||
"--without-conmon"
|
||||
"--without-squashfuse"
|
||||
];
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "sylabs";
|
||||
repo = "singularity";
|
||||
rev = "refs/tags/v${version}";
|
||||
hash = "sha256-/KTDdkCMkZ5hO+VYHzw9vB8FDWxg7PS1yb2waRJQngY=";
|
||||
extraDescription = " (Sylabs Inc's fork of Singularity, a.k.a. SingularityCE)";
|
||||
extraMeta.homepage = "https://sylabs.io/";
|
||||
})
|
||||
{
|
||||
# Sylabs SingularityCE builders defaults to set the SUID flag
|
||||
# on UNIX-like platforms,
|
||||
# and only have --without-suid but not --with-suid.
|
||||
defaultToSuid = true;
|
||||
};
|
||||
|
||||
# Update by running
|
||||
# nix-prefetch -E "{ sha256 }: ((import ./. { }).singularity.override { vendorHash = sha256; }).goModules"
|
||||
# at the root directory of the Nixpkgs repository
|
||||
vendorHash = "sha256-4Nxj2PzZmFdvouWKyXLFDk8iuRhFuvyPW/+VRTw75Zw=";
|
||||
genOverridenNixos =
|
||||
package: packageName:
|
||||
(nixos {
|
||||
programs.singularity = {
|
||||
enable = true;
|
||||
inherit package;
|
||||
};
|
||||
}).config.programs.singularity.packageOverriden.overrideAttrs
|
||||
(oldAttrs: {
|
||||
meta = oldAttrs.meta // {
|
||||
description = "";
|
||||
longDescription = ''
|
||||
This package produces identical store derivations to `pkgs.${packageName}`
|
||||
overriden and installed by the NixOS module `programs.singularity`
|
||||
with default configuration.
|
||||
|
||||
# Do not build conmon and squashfuse from the Git submodule sources,
|
||||
# Use Nixpkgs provided version
|
||||
extraConfigureFlags = [
|
||||
"--without-conmon"
|
||||
"--without-squashfuse"
|
||||
];
|
||||
|
||||
extraDescription = " (Sylabs Inc's fork of Singularity, a.k.a. SingularityCE)";
|
||||
extraMeta.homepage = "https://sylabs.io/";
|
||||
})
|
||||
{
|
||||
defaultToSuid = true;
|
||||
};
|
||||
|
||||
genOverridenNixos = package: packageName: (nixos {
|
||||
programs.singularity = {
|
||||
enable = true;
|
||||
inherit package;
|
||||
};
|
||||
}).config.programs.singularity.packageOverriden.overrideAttrs (oldAttrs: {
|
||||
meta = oldAttrs.meta // {
|
||||
description = "";
|
||||
longDescription = ''
|
||||
This package produces identical store derivations to `pkgs.${packageName}`
|
||||
overriden and installed by the NixOS module `programs.singularity`
|
||||
with default configuration.
|
||||
|
||||
This is for binary substitutes only. Use pkgs.${packageName} instead.
|
||||
'';
|
||||
};
|
||||
});
|
||||
This is for binary substitutes only. Use pkgs.${packageName} instead.
|
||||
'';
|
||||
};
|
||||
});
|
||||
in
|
||||
{
|
||||
inherit apptainer singularity;
|
||||
|
|
|
|||
Loading…
Reference in New Issue