platypus: init at 2017-03-07
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pkgs/applications/science/biology/platypus/default.nix
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38
pkgs/applications/science/biology/platypus/default.nix
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{stdenv, fetchFromGitHub, python27, htslib, zlib, makeWrapper}:
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let python = python27.withPackages (ps: with ps; [ cython ]);
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in stdenv.mkDerivation rec {
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name = "platypus-unstable-${version}";
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version = "2017-03-07";
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src = fetchFromGitHub {
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owner = "andyrimmer";
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repo = "Platypus";
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rev = "cbbd914";
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sha256 = "0xgj3pl7n4c12j5pp5qyjfk4rsvb5inwzrpcbhdf3br5f3mmdsb9";
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};
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buildInputs = [ htslib python zlib makeWrapper ];
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buildPhase = ''
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patchShebangs .
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make
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'';
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installPhase = ''
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mkdir -p $out/libexec/platypus
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cp -r ./* $out/libexec/platypus
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mkdir -p $out/bin
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makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py"
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'';
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meta = with stdenv.lib; {
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description = "The Platypus variant caller";
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license = licenses.gpl3;
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homepage = https://github.com/andyrimmer/Platypus;
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.unix;
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};
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}
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@ -16996,6 +16996,8 @@ with pkgs;
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paml = callPackage ../applications/science/biology/paml { };
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paml = callPackage ../applications/science/biology/paml { };
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platypus = callPackage ../applications/science/biology/platypus/default.nix { };
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plink = callPackage ../applications/science/biology/plink/default.nix { };
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plink = callPackage ../applications/science/biology/plink/default.nix { };
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plink-ng = callPackage ../applications/science/biology/plink-ng/default.nix { };
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plink-ng = callPackage ../applications/science/biology/plink-ng/default.nix { };
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