Merge staging-next into staging

pkgs/applications/graphics/darktable/default.nix

@@ -56,12 +56,12 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "4.6.0";
+  version = "4.6.1";
   pname = "darktable";
 
   src = fetchurl {
     url = "https://github.com/darktable-org/darktable/releases/download/release-${version}/darktable-${version}.tar.xz";
-    sha256 = "sha256-cksn4yBNGCLebcU+oJCmsc5V98MiJtNGQmiXdcaKrMI=";
+    sha256 = "sha256-Fu3AoHApPi082k6hDkm9qb3pMuI/nmLi+i56x0rPev0=";
   };
 
   nativeBuildInputs = [ cmake ninja llvmPackages.llvm pkg-config intltool perl desktop-file-utils wrapGAppsHook ];

pkgs/by-name/re/renode-dts2repl/package.nix

@@ -6,14 +6,14 @@
 
 python3.pkgs.buildPythonApplication {
   pname = "renode-dts2repl";
-  version = "unstable-2024-02-14";
+  version = "unstable-2024-02-16";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "antmicro";
     repo = "dts2repl";
-    rev = "b31d32ff4d02577f17bad214d8d7d17f0a5d0466";
-    hash = "sha256-BgbCS4wRoV4/Rt+nLPQGQh25YEnXMqIz3RXEbQEmZuE=";
+    rev = "83c35ebd87c000f37a0b873e7c82134da7daa7a2";
+    hash = "sha256-ga9D/5MkAso9NVK7cv2JryOoDF+a2ORN4MVQ3uns/zk=";
   };
 
   nativeBuildInputs = [

pkgs/by-name/re/rerun/0001-re_space_view_time_series-utils-patch-out-doctests-w.patch

@@ -0,0 +1,31 @@
+From f6c5dde13a39bd149d892162e2ef72267f4c4a57 Mon Sep 17 00:00:00 2001
+From: Someone Serge <sergei.kozlukov@aalto.fi>
+Date: Thu, 15 Feb 2024 18:05:16 +0000
+Subject: [PATCH] re_space_view_time_series: utils: patch out doctests w
+ unstable features
+
+---
+ crates/re_space_view_time_series/src/util.rs | 7 +------
+ 1 file changed, 1 insertion(+), 6 deletions(-)
+
+diff --git a/crates/re_space_view_time_series/src/util.rs b/crates/re_space_view_time_series/src/util.rs
+index 83ce5362f..59d3b9734 100644
+--- a/crates/re_space_view_time_series/src/util.rs
++++ b/crates/re_space_view_time_series/src/util.rs
+@@ -288,12 +288,7 @@ fn add_series_runs(
+ /// is finite `x == x.next_up().next_down()` also holds.
+ ///
+ /// ```rust
+-/// #![feature(float_next_up_down)]
+-/// // f64::EPSILON is the difference between 1.0 and the next number up.
+-/// assert_eq!(1.0f64.next_up(), 1.0 + f64::EPSILON);
+-/// // But not for most numbers.
+-/// assert!(0.1f64.next_up() < 0.1 + f64::EPSILON);
+-/// assert_eq!(9007199254740992f64.next_up(), 9007199254740994.0);
++/// // PATCHED OUT THE UNSTABLE float_next_up_down
+ /// ```
+ ///
+ /// [`NEG_INFINITY`]: f64::NEG_INFINITY
+-- 
+2.43.0
+

pkgs/by-name/re/rerun/package.nix

@@ -0,0 +1,128 @@
+{
+  lib,
+  rustPlatform,
+  fetchFromGitHub,
+  pkg-config,
+  stdenv,
+  binaryen,
+  rustfmt,
+  lld,
+  darwin,
+  freetype,
+  glib,
+  gtk3,
+  libxkbcommon,
+  openssl,
+  protobuf,
+  vulkan-loader,
+  wayland,
+  python3Packages,
+}:
+
+rustPlatform.buildRustPackage rec {
+  pname = "rerun";
+  version = "0.13.0";
+
+  src = fetchFromGitHub {
+    owner = "rerun-io";
+    repo = "rerun";
+    rev = version;
+    hash = "sha256-HgzzuvCpzKgWC8it0PSq62hBjjqpdgYtQQ50SNbr3do=";
+  };
+  patches = [
+    # Disables a doctest that depends on a nightly feature
+    ./0001-re_space_view_time_series-utils-patch-out-doctests-w.patch
+  ];
+
+  cargoHash = "sha256-qvnkOlcjADV4b+JfFAy9yNaZGaf0ZO7hh9HBg5XmPi0=";
+
+  nativeBuildInputs = [
+    (lib.getBin binaryen) # wasm-opt
+
+    # @SomeoneSerge: Upstream suggests `mold`, but I didn't get it to work
+    lld
+
+    pkg-config
+    protobuf
+    rustfmt
+  ];
+
+  buildInputs =
+    [
+      freetype
+      glib
+      gtk3
+      (lib.getDev openssl)
+      libxkbcommon
+      vulkan-loader
+    ]
+    ++ lib.optionals stdenv.isDarwin [
+      darwin.apple_sdk.frameworks.AppKit
+      darwin.apple_sdk.frameworks.CoreFoundation
+      darwin.apple_sdk.frameworks.CoreGraphics
+      darwin.apple_sdk.frameworks.CoreServices
+      darwin.apple_sdk.frameworks.Foundation
+      darwin.apple_sdk.frameworks.IOKit
+      darwin.apple_sdk.frameworks.Metal
+      darwin.apple_sdk.frameworks.QuartzCore
+      darwin.apple_sdk.frameworks.Security
+    ]
+    ++ lib.optionals stdenv.isLinux [ (lib.getLib wayland) ];
+
+  env.CARGO_TARGET_WASM32_UNKNOWN_UNKNOWN_LINKER = "lld";
+
+  addBuildInputRunpathsPhase = ''
+    declare _extraRunpaths
+    _sep=
+    for p in "''${pkgsHostTarget[@]}" ; do
+      if [[ -d "$p/lib" ]] ; then
+        _extraRunpaths+="$_sep$p/lib"
+        if [[ -z "$_sep" ]] ; then
+          _sep=:
+        fi
+      fi
+    done
+
+    elfHasDynamicSection() {
+        patchelf --print-rpath "$1" >& /dev/null
+    }
+
+    while IFS= read -r -d $'\0' path ; do
+      if elfHasDynamicSection "$path" ; then
+        patchelf "$path" --add-rpath "''${_extraRunpaths}"
+      fi
+    done < <(
+      for o in $(getAllOutputNames) ; do
+        find "''${!o}" -type f -and "(" -executable -or -iname '*.so' ")" -print0
+      done
+    )
+
+    unset _extraRunpaths
+    unset _sep
+  '';
+
+  postPhases = lib.optionals stdenv.isLinux [ "addBuildInputRunpathsPhase" ];
+
+  cargoTestFlags = [
+    "-p"
+    "rerun"
+    "--workspace"
+    "--exclude=crates/rerun/src/lib.rs"
+  ];
+
+  passthru.tests = {
+    inherit (python3Packages) rerun-sdk;
+  };
+
+  meta = with lib; {
+    description = "Visualize streams of multimodal data. Fast, easy to use, and simple to integrate.  Built in Rust using egui";
+    homepage = "https://github.com/rerun-io/rerun";
+    changelog = "https://github.com/rerun-io/rerun/blob/${src.rev}/CHANGELOG.md";
+    license = with licenses; [
+      asl20
+      mit
+    ];
+    maintainers = with maintainers; [ SomeoneSerge ];
+    mainProgram = "rerun";
+  };
+}

pkgs/by-name/uv/uv/Cargo.lock

@@ -203,9 +203,9 @@ dependencies = [
 
 [[package]]
 name = "async_http_range_reader"
-version = "0.5.0"
+version = "0.6.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ea8c52f8b749ec4e8665041001a31208afdae9ef88916d2edf1610deb8b3616e"
+checksum = "5143aaae4ec035a5d7cfda666eab896fe5428a2a8ab09ca651a2dce3a8f06912"
 dependencies = [
  "bisection",
  "futures",
@@ -213,6 +213,7 @@ dependencies = [
  "itertools 0.12.1",
  "memmap2 0.9.4",
  "reqwest",
+ "reqwest-middleware",
  "thiserror",
  "tokio",
  "tokio-stream",
@@ -4114,7 +4115,7 @@ checksum = "f00cc9702ca12d3c81455259621e676d0f7251cec66a21e98fe2e9a37db93b2a"
 
 [[package]]
 name = "uv"
-version = "0.1.3"
+version = "0.1.4"
 dependencies = [
  "anstream",
  "anyhow",

pkgs/by-name/uv/uv/package.nix

@@ -15,14 +15,14 @@
 
 python3.pkgs.buildPythonApplication rec {
   pname = "uv";
-  version = "0.1.3";
+  version = "0.1.4";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "astral-sh";
     repo = "uv";
     rev = version;
-    hash = "sha256-eOrmVI8Lc9ScWHst72xLayX0UHVij6h/jf2p8AXiIRE=";
+    hash = "sha256-0bG1nReTaNqjHXCeW8gg3AWfXpsm8KulX6jsZQMVLlg=";
   };
 
   cargoDeps = rustPlatform.importCargoLock {

pkgs/development/interpreters/python/hooks/default.nix

@@ -8,7 +8,9 @@ let
   pythonCheckInterpreter = python.interpreter;
   setuppy = ../run_setup.py;
 in {
-  makePythonHook = args: pkgs.makeSetupHook ({passthru.provides.setupHook = true; } // args);
+  makePythonHook = let
+    defaultArgs = { passthru.provides.setupHook = true; };
+  in args: pkgs.makeSetupHook (lib.recursiveUpdate defaultArgs args);
 
   condaInstallHook = callPackage ({ makePythonHook, gnutar, lbzip2 }:
     makePythonHook {
@@ -68,8 +70,8 @@ in {
       # Such conflicts don't happen within the standard nixpkgs python package
       #   set, but in downstream projects that build packages depending on other
       #   versions of this hook's dependencies.
-      passthru.tests = import ./pypa-build-hook-test.nix {
-        inherit pythonOnBuildForHost runCommand;
+      passthru.tests = callPackage ./pypa-build-hook-test.nix {
+        inherit pythonOnBuildForHost;
       };
     } ./pypa-build-hook.sh) {
       inherit (pythonOnBuildForHost.pkgs) build;

pkgs/development/python-modules/openai-triton/0001-ptxas-disable-version-key-for-non-cuda-targets.patch

@@ -0,0 +1,27 @@
+From 10f3d49aa6084d1b9b9624017cce7df106b9fb7e Mon Sep 17 00:00:00 2001
+From: Yaroslav Bolyukin <iam@lach.pw>
+Date: Tue, 6 Feb 2024 13:51:28 +0100
+Subject: [PATCH] ptxas: disable version key for non-cuda targets
+
+---
+ python/triton/runtime/jit.py | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/python/triton/runtime/jit.py b/python/triton/runtime/jit.py
+index d55972b4b..bd875a701 100644
+--- a/python/triton/runtime/jit.py
++++ b/python/triton/runtime/jit.py
+@@ -117,8 +117,8 @@ def version_key():
+         with open(lib.module_finder.find_spec(lib.name).origin, "rb") as f:
+             contents += [hashlib.md5(f.read()).hexdigest()]
+     # ptxas version
+-    ptxas = path_to_ptxas()[0]
+-    ptxas_version = hashlib.md5(subprocess.check_output([ptxas, "--version"])).hexdigest()
++    # ptxas = path_to_ptxas()[0]
++    ptxas_version = "noptxas"
+     return '-'.join(TRITON_VERSION) + '-' + ptxas_version + '-' + '-'.join(contents)
+ 
+ 
+-- 
+2.43.0
+

pkgs/development/python-modules/openai-triton/default.nix

@@ -19,6 +19,9 @@
 , filelock
 , torchWithRocm
 , python
+
+, runCommand
+
 , cudaPackages
 , cudaSupport ? config.cudaSupport
 }:
@@ -46,6 +49,9 @@ buildPythonPackage rec {
     })
   ] ++ lib.optionals (!cudaSupport) [
     ./0000-dont-download-ptxas.patch
+    # openai-triton wants to get ptxas version even if ptxas is not
+    # used, resulting in ptxas not found error.
+    ./0001-ptxas-disable-version-key-for-non-cuda-targets.patch
   ];
 
   nativeBuildInputs = [
@@ -71,7 +77,12 @@ buildPythonPackage rec {
     zlib
   ];
 
-  propagatedBuildInputs = [ filelock ];
+  propagatedBuildInputs = [
+    filelock
+    # openai-triton uses setuptools at runtime:
+    # https://github.com/NixOS/nixpkgs/pull/286763/#discussion_r1480392652
+    setuptools
+  ];
 
   postPatch = let
     # Bash was getting weird without linting,
@@ -150,7 +161,18 @@ buildPythonPackage rec {
   # ];
 
   # Ultimately, torch is our test suite:
-  passthru.tests = { inherit torchWithRocm; };
+  passthru.tests = {
+    inherit torchWithRocm;
+    # Implemented as alternative to pythonImportsCheck, in case if circular dependency on torch occurs again,
+    # and pythonImportsCheck is commented back.
+    import-triton = runCommand "import-triton" { nativeBuildInputs = [(python.withPackages (ps: [ps.openai-triton]))]; } ''
+      python << \EOF
+      import triton
+      import triton.language
+      EOF
+      touch "$out"
+    '';
+  };
 
   pythonRemoveDeps = [
     # Circular dependency, cf. https://github.com/openai/triton/issues/1374

pkgs/development/python-modules/rerun-sdk/default.nix

@@ -0,0 +1,70 @@
+{
+  buildPythonPackage,
+  lib,
+  rustPlatform,
+  stdenv,
+  attrs,
+  numpy,
+  pillow,
+  pyarrow,
+  rerun,
+  torch,
+  typing-extensions,
+  pytestCheckHook,
+  python,
+}:
+
+buildPythonPackage {
+  pname = "rerun-sdk";
+  inherit (rerun) version;
+  pyproject = true;
+
+  inherit (rerun) src;
+  inherit (rerun) cargoDeps;
+
+  nativeBuildInputs = [
+    rustPlatform.cargoSetupHook
+    rustPlatform.maturinBuildHook
+  ];
+
+  propagatedBuildInputs = [
+    attrs
+    numpy
+    pillow
+    pyarrow
+    typing-extensions
+  ];
+
+  buildAndTestSubdir = "rerun_py";
+
+  # https://github.com/NixOS/nixpkgs/issues/289340
+  #
+  # Alternatively, one could
+  # dontUsePythonImportsCheck = true;
+  # dontUsePytestCheck = true;
+  postInstall = ''
+    rm $out/${python.sitePackages}/rerun_sdk.pth
+    ln -s rerun_sdk/rerun $out/${python.sitePackages}/rerun
+  '';
+
+  pythonImportsCheck = [ "rerun" ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    torch
+  ];
+
+  inherit (rerun) addBuildInputRunpathsPhase;
+  postPhases = lib.optionals stdenv.isLinux [ "addBuildInputRunpathsPhase" ];
+
+  disabledTestPaths = [
+    # "fixture 'benchmark' not found"
+    "tests/python/log_benchmark/test_log_benchmark.py"
+  ];
+
+  meta = {
+    description = "Python bindings for `rerun` (an interactive visualization tool for stream data)";
+    inherit (rerun.meta) changelog homepage license maintainers;
+    mainProgram = "rerun";
+  };
+}

pkgs/development/python-modules/trimesh/default.nix

@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "trimesh";
-  version = "4.1.3";
+  version = "4.1.4";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-SIHIA6HKo3Ka6rmZrBZfSmN/sNfEjSImYUtbtQs3ozQ=";
+    hash = "sha256-JeURuw0YImIKRwi35tYWDa5CQqYfPZm+NJiap8Qo6mE=";
   };
 
   nativeBuildInputs = [ setuptools ];

pkgs/development/tools/ruff/default.nix

@@ -1,7 +1,6 @@
 { lib
 , rustPlatform
 , fetchFromGitHub
-, fetchpatch
 , installShellFiles
 , stdenv
 , darwin
@@ -11,33 +10,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "ruff";
-  version = "0.2.1";
+  version = "0.2.2";
 
   src = fetchFromGitHub {
     owner = "astral-sh";
     repo = "ruff";
     rev = "refs/tags/v${version}";
-    hash = "sha256-VcDDGi6fPGZ75+J7aOSr7S6Gt5bpr0vM2Sk/Utlmf4k=";
+    hash = "sha256-wCjPlKlw0IAh5oH4W7DUw3KBxR4bt9Ho7ncRL5TbD/0=";
   };
 
-  patches = [
-    # TODO: remove at next release
-    (fetchpatch {
-      name = "filter-out-test-rules-in-ruleselector-json-schema";
-      url = "https://github.com/astral-sh/ruff/commit/49c5e715f9c85aa8d0412b2ec9b1dd6f7ae24c5c.patch";
-      hash = "sha256-s0Nv5uW3TKfKgro3V3E8Q0c8uOTgOKZQx9CxXge4YWE=";
-    })
-  ];
-
-  # The following specific substitution is not working as the current directory is `/build/source` and thus has no mention of `ruff` in it.
-  # https://github.com/astral-sh/ruff/blob/866bea60a5de3c59d2537b0f3a634ae0ac9afd94/crates/ruff/tests/show_settings.rs#L12
-  # -> Just patch it so that it expects the actual current directory and not `"[BASEPATH]"`.
-  postPatch = ''
-    substituteInPlace crates/ruff/tests/snapshots/show_settings__display_default_settings.snap \
-      --replace '"[BASEPATH]"' '"'$PWD'"'
-  '';
-
-  cargoHash = "sha256-B7AiDNWEN4i/Lz9yczlRNXczQph52SMa3pcxK2AtO2A=";
+  cargoHash = "sha256-EHAlsEh3YnAhjIGC9rSgyK3gbKPCJqI6F3uAqZxv2nU=";
 
   nativeBuildInputs = [
     installShellFiles

pkgs/tools/backup/zfs-replicate/default.nix

@@ -11,12 +11,12 @@
 
 buildPythonApplication rec {
   pname = "zfs_replicate";
-  version = "3.2.6";
-  format = "pyproject";
+  version = "3.2.7";
+  pyproject = true;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-K+OCJmx0KfFTuaP3c5oFJqWa+zqYJtoruO2v/F0FtfA=";
+    hash = "sha256-+FJuV9BVfG2LbakE4Pw5ZhooSGq8xey9f3ATPTlCSkg=";
   };
 
   postPatch = ''

pkgs/top-level/python-packages.nix

@@ -12680,6 +12680,8 @@ self: super: with self; {
 
   reretry = callPackage ../development/python-modules/reretry { };
 
+  rerun-sdk = callPackage ../development/python-modules/rerun-sdk { };
+
   resampy = callPackage ../development/python-modules/resampy { };
 
   resize-right = callPackage ../development/python-modules/resize-right { };