Merge staging-next into staging

pkgs/applications/science/biology/neuron/default.nix

@@ -80,6 +80,11 @@ stdenv.mkDerivation rec {
                 potential close to the membrane), and where cell membrane properties are complex,
                 involving many ion-specific channels, ion accumulation, and second messengers";
 
+    sourceProvenance = with sourceTypes; [
+      fromSource
+    ] ++ lib.optionals (python != null) [
+      binaryNativeCode  # "geometry3d" bundled libraries
+    ];
     license     = licenses.bsd3;
     homepage    = "http://www.neuron.yale.edu/neuron";
     maintainers = [ maintainers.adev ];

pkgs/development/libraries/faudio/default.nix

@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   pname = "faudio";
-  version = "22.02";
+  version = "22.04";
 
   src = fetchFromGitHub {
     owner = "FNA-XNA";
     repo = "FAudio";
     rev = version;
-    sha256 = "sha256-qjXFpxoFF70aOaEq9/JfI2DtFxxHjyK2OnDaXMiqQMM=";
+    sha256 = "sha256-2XQpwPNWjK5FF9ex5QxrGEPsUXT/MBqjXy7P2D/SxZw=";
   };
 
   nativeBuildInputs = [cmake];

pkgs/development/mobile/androidenv/tools/25.nix

@@ -58,5 +58,5 @@ deployAndroidPackage {
     ${postInstall}
   '';
 
-  meta.licenses = lib.licenses.unfree;
+  meta.license = lib.licenses.unfree;
 }

pkgs/development/mobile/androidenv/tools/26.nix

@@ -40,5 +40,5 @@ deployAndroidPackage {
     ${postInstall}
   '';
 
-  meta.licenses = lib.licenses.unfree;
+  meta.license = lib.licenses.unfree;
 }

pkgs/development/mobile/gomobile/default.nix

@@ -9,15 +9,15 @@
 
 buildGoModule {
   pname = "gomobile";
-  version = "unstable-2021-06-14";
+  version = "unstable-2022-05-18";
 
-  vendorSha256 = "1irgkgv72rakg7snk1bnp10ibr64ykz9l40s59l4fnl63zsh12a0";
+  vendorSha256 = "sha256-AmOy3X+d2OD7ZLbFuy+SptdlgWbZJaXYEgO79M64ufE=";
 
   src = fetchgit {
-    rev = "7c8f154d100840bc5828285bb390bbae1cb5a98c";
+    rev = "8578da9835fd365e78a6e63048c103b27a53a82c";
     name = "gomobile";
     url = "https://go.googlesource.com/mobile";
-    sha256 = "1w9mra1mqf60iafp0ywvja5196fjsjyfhvz4yizqq4qkyll5qmj1";
+    sha256 = "sha256-AOR/p+DW83f2+BOxm2rFXBCrotcIyunK3UzQ/dnauWY=";
   };
 
   subPackages = [ "bind" "cmd/gobind" "cmd/gomobile" ];
@@ -32,8 +32,7 @@ buildGoModule {
   postPatch = ''
     substituteInPlace cmd/gomobile/env.go --replace \
       'tmpdir, err = ioutil.TempDir("", "gomobile-work-")' \
-      'tmpdir = filepath.Join(os.Getenv("NIX_BUILD_TOP"), "gomobile-work")' \
-      --replace '"io/ioutil"' ""
+      'tmpdir = filepath.Join(os.Getenv("NIX_BUILD_TOP"), "gomobile-work")'
     substituteInPlace cmd/gomobile/init.go --replace \
       'tmpdir, err = ioutil.TempDir(gomobilepath, "work-")' \
       'tmpdir = filepath.Join(os.Getenv("NIX_BUILD_TOP"), "work")'
@@ -43,13 +42,18 @@ buildGoModule {
   postInstall = ''
     mkdir -p $out/src/golang.org/x
     ln -s $src $out/src/golang.org/x/mobile
-    wrapProgram $out/bin/gomobile \
+  '';
+
+  postFixup = ''
+    for bin in $(ls $out/bin); do
+      wrapProgram $out/bin/$bin \
+        --suffix GOPATH : $out \
   '' + lib.optionalString withAndroidPkgs ''
-      --prefix PATH : "${androidPkgs.androidsdk}/bin" \
-      --set ANDROID_NDK_HOME "${androidPkgs.androidsdk}/libexec/android-sdk/ndk-bundle" \
-      --set ANDROID_HOME "${androidPkgs.androidsdk}/libexec/android-sdk" \
+        --prefix PATH : "${androidPkgs.androidsdk}/bin" \
+        --set-default ANDROID_HOME "${androidPkgs.androidsdk}/libexec/android-sdk" \
   '' + ''
-      --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ zlib ]}"
+        --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ zlib ]}"
+    done
   '';
 
   meta = with lib; {

pkgs/development/python-modules/JPype1/default.nix

@@ -31,6 +31,10 @@ buildPythonPackage rec {
 
   meta = with lib; {
     homepage = "https://github.com/originell/jpype/";
+    sourceProvenance = with sourceTypes; [
+      fromSource
+      binaryBytecode
+    ];
     license = licenses.asl20;
     description = "A Python to Java bridge";
   };

pkgs/development/python-modules/adb-enhanced/default.nix

@@ -40,6 +40,10 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Tool for Android testing and development";
     homepage = "https://github.com/ashishb/adb-enhanced";
+    sourceProvenance = with sourceTypes; [
+      fromSource
+      binaryBytecode
+    ];
     license = licenses.asl20;
     maintainers = with maintainers; [ vtuan10 ];
     mainProgram = "adbe";

pkgs/development/python-modules/amazon-ion/default.nix

@@ -41,6 +41,10 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Python implementation of Amazon Ion";
     homepage = "https://github.com/amzn/ion-python";
+    sourceProvenance = with sourceTypes; [
+      fromSource
+      binaryNativeCode
+    ];
     license = licenses.asl20;
     maintainers = with maintainers; [ terlar ];
   };

pkgs/development/python-modules/databricks-connect/default.nix

@@ -41,6 +41,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Client for connecting to remote Databricks clusters";
     homepage = "https://pypi.org/project/databricks-connect";
+    sourceProvenance = with sourceTypes; [ binaryBytecode ];
     license = licenses.databricks;
     maintainers = with maintainers; [ kfollesdal ];
   };

pkgs/development/python-modules/gurobipy/linux.nix

@@ -22,6 +22,7 @@ buildPythonPackage {
   meta = with lib; {
     description = "The Gurobi Python interface";
     homepage = "https://www.gurobi.com";
+    sourceProvenance = with sourceTypes; [ binaryNativeCode ];
     license = licenses.unfree;
     platforms = [ "x86_64-linux" ];
   };

pkgs/development/python-modules/peaqevcore/default.nix

@@ -6,14 +6,14 @@
 
 buildPythonPackage rec {
   pname = "peaqevcore";
-  version = "1.0.19";
+  version = "1.1.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-c+DTawzDwrNmv9RGRa5hEw+cKLTo3BKx3hK8zHW7tWk=";
+    hash = "sha256-hTHsY/Xs30DXD6T8pAS3NvGqBPeS3PKRRyH5UxaU57c=";
   };
 
   postPatch = ''

pkgs/development/python-modules/pglast/default.nix

@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "pglast";
-  version = "3.11";
+  version = "3.12";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-JvWYrfo4HmvzwJ4vi8iGMfUKTMmpN6FS8fx2McKDj3Y=";
+    hash = "sha256-9lPyillQyCTXiHCCLq1DKG6YbKWSYu9h8AGijO3xN/M=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/py4j/default.nix

@@ -16,6 +16,10 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Py4J enables Python programs running in a Python interpreter to dynamically access Java objects in a Java Virtual Machine. Methods are called as if the Java objects resided in the Python interpreter and Java collections can be accessed through standard Python collection methods. Py4J also enables Java programs to call back Python objects.";
     homepage = "https://www.py4j.org/";
+    sourceProvenance = with sourceTypes; [
+      fromSource
+      binaryBytecode
+    ];
     license = licenses.bsd3;
     maintainers = [ maintainers.shlevy ];
   };

pkgs/development/python-modules/pyspark/default.nix

@@ -35,6 +35,10 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Python bindings for Apache Spark";
     homepage = "https://github.com/apache/spark/tree/master/python";
+    sourceProvenance = with sourceTypes; [
+      fromSource
+      binaryBytecode
+    ];
     license = licenses.asl20;
     maintainers = [ maintainers.shlevy ];
   };

pkgs/development/python-modules/python-ldap-test/default.nix

@@ -17,6 +17,10 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Tool for testing code speaking with LDAP server";
     homepage = "https://github.com/zoldar/python-ldap-test";
+    sourceProvenance = with sourceTypes; [
+      fromSource
+      binaryBytecode
+    ];
     license = licenses.mit;
     maintainers = with maintainers; [ psyanticy ];
   };

pkgs/development/python-modules/qiskit-nature/default.nix

@@ -64,6 +64,10 @@ buildPythonPackage rec {
     homepage = "https://qiskit.org";
     downloadPage = "https://github.com/QISKit/qiskit-nature/releases";
     changelog = "https://qiskit.org/documentation/release_notes.html";
+    sourceProvenance = with sourceTypes; [
+      fromSource
+      binaryNativeCode  # drivers/gaussiand/gauopen/*.so
+    ];
     license = licenses.asl20;
     maintainers = with maintainers; [ drewrisinger ];
   };

pkgs/development/tools/ocaml/dune/3.nix

@@ -6,11 +6,11 @@ else
 
 stdenv.mkDerivation rec {
   pname = "dune";
-  version = "3.2.0";
+  version = "3.3.1";
 
   src = fetchurl {
-    url = "https://github.com/ocaml/dune/releases/download/${version}/chrome-trace-${version}.tbz";
-    sha256 = "sha256-vR+85q557R6yb6ibsuLiOXivzrP1P1V4zxvasIoa1bw=";
+    url = "https://github.com/ocaml/dune/releases/download/${version}/dune-${version}.tbz";
+    sha256 = "sha256-hAyASRv+Erq18rmdSeFj8+TE0vxLSj5vsWwk3M1VAuE=";
   };
 
   nativeBuildInputs = [ ocaml findlib ];

pkgs/games/gcompris/default.nix

@@ -18,11 +18,11 @@
 
 mkDerivation rec {
   pname = "gcompris";
-  version = "2.3";
+  version = "2.4";
 
   src = fetchurl {
     url = "https://download.kde.org/stable/gcompris/qt/src/gcompris-qt-${version}.tar.xz";
-    sha256 = "sha256-UgWLp5IVqbeFFCO/PRFJ/X1sPm7nSkagVcgEp5SdzGI=";
+    sha256 = "sha256-/QZub48rarVHcD0PgOPc6NTlOKrsEzVK/qjHb5CjWS0=";
   };
 
   cmakeFlags = [

pkgs/tools/security/decoder/default.nix

@@ -0,0 +1,39 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, openssl
+}:
+
+stdenv.mkDerivation rec {
+  pname = "decoder";
+  version = "unstable-2021-11-20";
+
+  src = fetchFromGitHub {
+    owner = "PeterPawn";
+    repo = "decoder";
+    rev = "da0f826629d4e7b873f9d1a39f24c50ff0a68cd2";
+    sha256 = "sha256-1sT1/iwtc2ievmLuNuooy9b14pTs1ZC5noDwzFelk7w=";
+  };
+
+  buildInputs = [
+    openssl
+  ];
+
+  makeFlags = [ "OPENSSL=y" ];
+
+  installPhase = ''
+    runHook preInstall
+
+    install -Dm755 src/decoder "$out/bin/decoder"
+
+    runHook postInstall
+  '';
+
+  meta = with lib; {
+    homepage = "https://github.com/PeterPawn/decoder";
+    description = ''"secrets" decoding for FRITZ!OS devices'';
+    license = licenses.gpl2Plus;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ Luflosi ];
+  };
+}

pkgs/top-level/all-packages.nix

@@ -7148,6 +7148,8 @@ with pkgs;
 
   deco = callPackage ../applications/misc/deco { };
 
+  decoder = callPackage ../tools/security/decoder { };
+
   icoutils = callPackage ../tools/graphics/icoutils { };
 
   idutils = callPackage ../tools/misc/idutils { };