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nimPackages.hts: 0.3.4 -> 0.3.23, rename from hts-nim

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This commit is contained in:
Emery Hemingway 2023-08-02 14:45:28 +01:00
parent 714fb0684e
commit 9025a583b1
4 changed files with 24 additions and 17 deletions
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4
pkgs/applications/science/biology/mosdepth/default.nix
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@ -1,4 +1,4 @@
{lib, nimPackages, fetchFromGitHub, pcre}:
{ lib, nimPackages, fetchFromGitHub, docopt, hts, pcre }:
nimPackages.buildNimPackage rec {
pname = "mosdepth";
@ -12,7 +12,7 @@ nimPackages.buildNimPackage rec {
sha256 = "sha256-7uteYTCbAaXedPqk0WtHpqTfUWH/+rRW8aSlFixkEko=";
};
buildInputs = with nimPackages; [ docopt hts-nim pcre ];
buildInputs = [ docopt hts pcre ];
meta = with lib; {
description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing";

14
pkgs/development/nim-packages/hts-nim/default.nix
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@ -1,14 +0,0 @@
{ buildNimPackage, fetchFromGitHub, htslib }:
buildNimPackage rec {
pname = "hts-nim";
version = "0.3.4";
src = fetchFromGitHub {
owner = "brentp";
repo = pname;
rev = "v${version}";
sha256 = "0670phk1bq3l9j2zaa8i5wcpc5dyfrc0l2a6c21g0l2mmdczffa7";
};
propagatedBuildInputs = [ htslib ];
doCheck = false;
}

21
pkgs/development/nim-packages/hts/default.nix Normal file
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@ -0,0 +1,21 @@
{ lib, buildNimPackage, fetchFromGitHub, htslib }:
buildNimPackage (final: prev: {
pname = "hts";
version = "0.3.23";
src = fetchFromGitHub {
owner = "brentp";
repo = "hts-nim";
rev = "v${final.version}";
hash = "sha256-o27yOtzW4hk8dpicqjW4D8zxqXHdxcz+e84PyK+yBq8=";
};
propagatedBuildInputs = [ htslib ];
nimFlags = [ "--mm:refc" ];
doCheck = false;
meta = final.src.meta // {
description = "Nim wrapper for htslib for parsing genomics data files";
homepage = "https://brentp.github.io/hts-nim/";
license = [ lib.licenses.mit ];
maintainers = with lib.maintainers; [ ehmry ];
};
})

2
pkgs/top-level/nim-packages.nix
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@ -46,7 +46,7 @@ lib.makeScope newScope (self:
hashlib = callPackage ../development/nim-packages/hashlib { };
hts-nim = callPackage ../development/nim-packages/hts-nim { };
hts = callPackage ../development/nim-packages/hts { };
illwill = callPackage ../development/nim-packages/illwill { };