colin/nixpkgs
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

bowtie2: init at 2.3.3.1

Browse Source
This commit is contained in:
Ryan Bernstein 2017-10-21 16:20:41 -04:00 committed by Robin Gloster
parent 7d8e1c358b
commit 941014ffff
2 changed files with 28 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

26
pkgs/applications/science/biology/bowtie2/default.nix Normal file
View File

@ -0,0 +1,26 @@
{ stdenv, fetchFromGitHub, zlib, tbb }:
stdenv.mkDerivation rec {
pname = "bowtie2";
version = "2.3.3.1";
name = "${pname}-${version}";
src = fetchFromGitHub {
owner = "BenLangmead";
repo = pname;
rev = "v${version}";
sha256 = "1pcyks76bnnkq6h0gqjw4fkdddjjnw7k5ibim7ajkbvfw58a99y0";
};
buildInputs = [ zlib tbb ];
installFlags = [ "prefix=$(out)" ];
meta = with stdenv.lib; {
description = "An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences";
license = licenses.gpl3;
homepage = http://bowtie-bio.sf.net/bowtie2;
maintainers = with maintainers; [ rybern ];
platforms = platforms.all;
};
}

2
pkgs/top-level/all-packages.nix
View File

@ -762,6 +762,8 @@ with pkgs;
bootchart = callPackage ../tools/system/bootchart { };
bowtie2 = callPackage ../applications/science/biology/bowtie2 { };
boxfs = callPackage ../tools/filesystems/boxfs { };
brasero-original = lowPrio (callPackage ../tools/cd-dvd/brasero { });