colin/nixpkgs
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

delly: 0.8.1 -> 0.8.2

Browse Source 
Backported patch required for htslib 1.10.2
This commit is contained in:
Justin Bedo 2020-02-11 10:10:19 +11:00
parent 7d927677f4
commit a8fe9e7aff
No known key found for this signature in database
GPG Key ID: 2C18202C56C182BD
1 changed files with 13 additions and 4 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

17
pkgs/applications/science/biology/delly/default.nix
View File

@ -1,16 +1,25 @@
{ stdenv, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
stdenv.mkDerivation rec {
let
htslibPatch = fetchpatch {
url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff";
sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y";
excludes = [ "src/htslib" ];
};
in stdenv.mkDerivation rec {
pname = "delly";
version = "0.8.1";
version = "0.8.2";
src = fetchFromGitHub {
owner = "dellytools";
repo = pname;
rev = "v${version}";
sha256 = "18gm86j1g1k4z1cjv2m5v9rsl1xqs2w3dhwcsnzx2mhkrvmlc4i1";
sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs";
};
patches = [ htslibPatch ];
buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
EBROOTHTSLIB = htslib;