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ocamlPackages.phylogenetics: unstable-2022-05-06 → 0.2.0

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Vincent Laporte 2024-04-23 08:50:17 +02:00
parent 15526d81c5
commit b377e019ca
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2 changed files with 9 additions and 14 deletions
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22
pkgs/development/ocaml-modules/phylogenetics/default.nix
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@ -1,32 +1,27 @@
{ lib { lib
, ocaml
, buildDunePackage , buildDunePackage
, fetchFromGitHub , fetchurl
, ppx_deriving , ppx_deriving
, bppsuite , bppsuite
, alcotest , alcotest
, angstrom-unix , angstrom-unix
, biocaml , biotk
, core , core
, gsl , gsl
, lacaml , lacaml
, menhir , menhir
, menhirLib , menhirLib
, printbox-text , printbox-text
, yojson
}: }:
lib.throwIf (lib.versionAtLeast ocaml.version "5.0")
"phylogenetics is not compatible with OCaml ${ocaml.version}"
buildDunePackage rec { buildDunePackage rec {
pname = "phylogenetics"; pname = "phylogenetics";
version = "unstable-2022-05-06"; version = "0.2.0";
src = fetchFromGitHub { src = fetchurl {
owner = "biocaml"; url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/phylogenetics-${version}.tbz";
repo = pname; hash = "sha256-JFpYp3pyW7PrBjqCwwDZxkJPA84dp6Qs8rOPvHPY92o=";
rev = "cd7c624d0f98e31b02933ca4511b9809b26d35b5";
sha256 = "sha256:0w0xyah3hj05hxg1rsa40hhma3dm1cyq0zvnjrihhf22laxap7ga";
}; };
minimalOCamlVersion = "4.08"; minimalOCamlVersion = "4.08";
@ -36,13 +31,14 @@ buildDunePackage rec {
nativeBuildInputs = [ menhir ]; nativeBuildInputs = [ menhir ];
propagatedBuildInputs = [ propagatedBuildInputs = [
angstrom-unix angstrom-unix
biocaml biotk
core core
gsl gsl
lacaml lacaml
menhirLib menhirLib
ppx_deriving ppx_deriving
printbox-text printbox-text
yojson
]; ];
checkPhase = '' checkPhase = ''

1
pkgs/top-level/ocaml-packages.nix
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@ -835,7 +835,6 @@ let
phylogenetics = let phylogenetics = let
angstrom = self.angstrom.override { inherit ppx_let; }; angstrom = self.angstrom.override { inherit ppx_let; };
in callPackage ../development/ocaml-modules/phylogenetics { in callPackage ../development/ocaml-modules/phylogenetics {
inherit biocaml;
ppx_deriving = self.ppx_deriving.override { inherit (jsDeps) ppxlib; }; ppx_deriving = self.ppx_deriving.override { inherit (jsDeps) ppxlib; };
angstrom-unix = self.angstrom-unix.override { inherit angstrom; }; angstrom-unix = self.angstrom-unix.override { inherit angstrom; };
}; };