Merge pull request #79864 from doronbehar/improve-octave

octave: Use qt5 and other improvements

pkgs/development/interpreters/octave/default.nix

@@ -1,8 +1,54 @@
-{ stdenv, fetchurl, gfortran, readline, ncurses, perl, flex, texinfo, qhull
-, libsndfile, portaudio, libX11, graphicsmagick, pcre, pkgconfig, libGL, libGLU, fltk
-, fftw, fftwSinglePrec, zlib, curl, qrupdate, openblas, arpack, libwebp, gl2ps
-, qt ? null, qscintilla ? null, ghostscript ? null, llvm ? null, hdf5 ? null,glpk ? null
-, suitesparse ? null, gnuplot ? null, jdk ? null, python ? null, overridePlatforms ? null
+{ stdenv
+, fetchurl
+, gfortran
+, ncurses
+, perl
+, flex
+, texinfo
+, qhull
+, libsndfile
+, portaudio
+, libX11
+, graphicsmagick
+, pcre
+, pkgconfig
+, libGL
+, libGLU
+, fltk
+# Both are needed for discrete Fourier transform
+, fftw
+, fftwSinglePrec
+, zlib
+, curl
+, qrupdate
+, openblas
+, arpack
+, libwebp
+, gl2ps
+, ghostscript ? null
+, hdf5 ? null
+, glpk ? null
+, suitesparse ? null
+, gnuplot ? null
+# - Include support for GNU readline:
+, enableReadline ? true
+, readline ? null
+# - Build Java interface:
+, enableJava ? true
+, jdk ? null
+, python ? null
+, overridePlatforms ? null
+, sundials_2 ? null
+# - Build Octave Qt GUI:
+, enableQt ? false
+, qtbase ? null
+, qtsvg ? null
+, qtscript ? null
+, qscintilla ? null
+, qttools ? null
+# - JIT compiler for loops:
+, enableJIT ? false
+, llvm ? null
 }:
 
 let
@@ -20,33 +66,63 @@ in
 stdenv.mkDerivation rec {
   version = "5.2.0";
   pname = "octave";
+
   src = fetchurl {
     url = "mirror://gnu/octave/${pname}-${version}.tar.gz";
     sha256 = "1qcmcpsq1lfka19fxzvxjwjhg113c39a9a0x8plkhvwdqyrn5sig";
   };
 
-  buildInputs = [ gfortran readline ncurses perl flex texinfo qhull
-    graphicsmagick pcre pkgconfig fltk zlib curl openblas libsndfile fftw
-    fftwSinglePrec portaudio qrupdate arpack libwebp gl2ps ]
-    ++ (stdenv.lib.optional (qt != null) qt)
-    ++ (stdenv.lib.optional (qscintilla != null) qscintilla)
-    ++ (stdenv.lib.optional (ghostscript != null) ghostscript)
-    ++ (stdenv.lib.optional (llvm != null) llvm)
-    ++ (stdenv.lib.optional (hdf5 != null) hdf5)
-    ++ (stdenv.lib.optional (glpk != null) glpk)
-    ++ (stdenv.lib.optional (suitesparse != null) suitesparse)
-    ++ (stdenv.lib.optional (jdk != null) jdk)
-    ++ (stdenv.lib.optional (gnuplot != null) gnuplot)
-    ++ (stdenv.lib.optional (python != null) python)
-    ++ (stdenv.lib.optionals (!stdenv.isDarwin) [ libGL libGLU libX11 ])
-    ;
-
-  # makeinfo is required by Octave at runtime to display help
-  prePatch = ''
-    substituteInPlace libinterp/corefcn/help.cc \
-      --replace 'Vmakeinfo_program = "makeinfo"' \
-                'Vmakeinfo_program = "${texinfo}/bin/makeinfo"'
-  '';
+  buildInputs = [
+    readline
+    ncurses
+    perl
+    flex
+    qhull
+    graphicsmagick
+    pcre
+    fltk
+    zlib
+    curl
+    openblas
+    libsndfile
+    fftw
+    fftwSinglePrec
+    portaudio
+    qrupdate
+    arpack
+    libwebp
+    gl2ps
+  ]
+  ++ (stdenv.lib.optionals enableQt [
+    qtbase
+    qtsvg
+    qscintilla
+  ])
+  ++ (stdenv.lib.optional (ghostscript != null) ghostscript)
+  ++ (stdenv.lib.optional (hdf5 != null) hdf5)
+  ++ (stdenv.lib.optional (glpk != null) glpk)
+  ++ (stdenv.lib.optional (suitesparse != null) suitesparse)
+  ++ (stdenv.lib.optional (enableJava) jdk)
+  ++ (stdenv.lib.optional (sundials_2 != null) sundials_2)
+  ++ (stdenv.lib.optional (gnuplot != null) gnuplot)
+  ++ (stdenv.lib.optional (python != null) python)
+  ++ (stdenv.lib.optionals (!stdenv.isDarwin) [ libGL libGLU libX11 ])
+  ;
+  nativeBuildInputs = [
+    pkgconfig
+    gfortran 
+    # Listed here as well because it's outputs are split
+    fftw
+    fftwSinglePrec
+    texinfo
+  ]
+  ++ (stdenv.lib.optional (sundials_2 != null) sundials_2)
+  ++ (stdenv.lib.optional enableJIT llvm)
+  ++ (stdenv.lib.optionals enableQt [
+    qtscript
+    qttools
+  ])
+  ;
 
   doCheck = !stdenv.isDarwin;
 
@@ -55,15 +131,16 @@ stdenv.mkDerivation rec {
   # See https://savannah.gnu.org/bugs/?50339
   F77_INTEGER_8_FLAG = if openblas.blas64 then "-fdefault-integer-8" else "";
 
-  configureFlags =
-    [ "--enable-readline"
-      "--enable-dl"
-      "--with-blas=openblas"
-      "--with-lapack=openblas"
-    ]
-    ++ stdenv.lib.optional openblas.blas64 "--enable-64"
-    ++ stdenv.lib.optionals stdenv.isDarwin ["--with-x=no"]
-    ;
+  configureFlags = [
+    "--with-blas=openblas"
+    "--with-lapack=openblas"
+  ]
+    ++ stdenv.lib.optionals enableReadline [ "--enable-readline" ]
+    ++ stdenv.lib.optionals openblas.blas64 [ "--enable-64" ]
+    ++ stdenv.lib.optionals stdenv.isDarwin [ "--with-x=no" ]
+    ++ stdenv.lib.optionals enableQt [ "--with-qt=5" ]
+    ++ stdenv.lib.optionals enableJIT [ "--enable-jit" ]
+  ;
 
   # Keep a copy of the octave tests detailed results in the output
   # derivation, because someone may care
@@ -81,6 +158,8 @@ stdenv.mkDerivation rec {
     license = stdenv.lib.licenses.gpl3Plus;
     maintainers = with stdenv.lib.maintainers; [raskin];
     description = "Scientific Pragramming Language";
+    # https://savannah.gnu.org/bugs/?func=detailitem&item_id=56425 is the best attempt to fix JIT
+    broken = enableJIT;
     platforms = if overridePlatforms == null then
       (with stdenv.lib.platforms; linux ++ darwin)
     else overridePlatforms;

pkgs/development/libraries/sundials/2.x.nix

@@ -0,0 +1,61 @@
+{ stdenv
+, cmake
+, fetchurl
+, python
+# GNU Octave needs KLU for ODE solvers
+, suitesparse
+, liblapack
+, gfortran
+, lapackSupport ? true }:
+
+let liblapackShared = liblapack.override {
+  shared = true;
+};
+
+in stdenv.mkDerivation rec {
+  pname = "sundials";
+  version = "2.7.0";
+
+  buildInputs = [ python ] ++ stdenv.lib.optionals (lapackSupport) [
+    gfortran
+    suitesparse
+  ];
+  nativeBuildInputs = [ cmake ];
+
+  src = fetchurl {
+    url = "https://computation.llnl.gov/projects/${pname}/download/${pname}-${version}.tar.gz";
+    sha256 = "01513g0j7nr3rh7hqjld6mw0mcx5j9z9y87bwjc16w2x2z3wm7yk";
+  };
+
+  patches = [
+    (fetchurl {
+      # https://github.com/LLNL/sundials/pull/19
+      url = "https://github.com/LLNL/sundials/commit/1350421eab6c5ab479de5eccf6af2dcad1eddf30.patch";
+      sha256 = "0g67lixp9m85fqpb9rzz1hl1z8ibdg0ldwq5z6flj5zl8a7cw52l";
+    })
+  ];
+
+  cmakeFlags = [
+    "-DEXAMPLES_INSTALL_PATH=${placeholder "out"}/share/examples"
+  ] ++ stdenv.lib.optionals (lapackSupport) [
+    "-DSUNDIALS_INDEX_TYPE=int32_t"
+    # GNU Octave needs KLU for ODE solvers
+    "-DKLU_ENABLE=ON"
+    "-DKLU_INCLUDE_DIR=${suitesparse}/include"
+    "-DKLU_LIBRARY_DIR=${suitesparse}/lib"
+    "-DLAPACK_ENABLE=ON"
+    "-DLAPACK_LIBRARIES=${liblapackShared}/lib/liblapack${stdenv.hostPlatform.extensions.sharedLibrary};${liblapackShared}/lib/libblas${stdenv.hostPlatform.extensions.sharedLibrary}"
+  ];
+
+  # flaky tests, and patch in https://github.com/LLNL/sundials/pull/21 doesn't apply cleanly for sundials_3
+  doCheck = false;
+  checkPhase = "make test";
+
+  meta = with stdenv.lib; {
+    description = "Suite of nonlinear differential/algebraic equation solvers";
+    homepage    = https://computation.llnl.gov/projects/sundials;
+    platforms   = platforms.all;
+    maintainers = with maintainers; [ flokli idontgetoutmuch ];
+    license     = licenses.bsd3;
+  };
+}

pkgs/top-level/all-packages.nix

@@ -9247,23 +9247,19 @@ in
   };
 
   octave = callPackage ../development/interpreters/octave {
-    qt = null;
-    qscintilla = null;
-    ghostscript = null;
-    graphicsmagick = null;
-    llvm = null;
-    hdf5 = null;
-    glpk = null;
-    suitesparse = null;
-    jdk = null;
+    python = python3;
     openblas = if stdenv.isDarwin then openblasCompat else openblas;
   };
-
-  octaveFull = (lowPrio (octave.override {
-    qt = qt4;
-    inherit qscintilla;
-    overridePlatforms = ["x86_64-linux" "x86_64-darwin"];
+  octave-jit = callPackage ../development/interpreters/octave {
+    python = python3;
     openblas = if stdenv.isDarwin then openblasCompat else openblas;
+    enableJIT = true;
+  };
+  octaveFull = (lowPrio (libsForQt512.callPackage ../development/interpreters/octave {
+    python = python3;
+    openblas = if stdenv.isDarwin then openblasCompat else openblas;
+    enableQt = true;
+    overridePlatforms = ["x86_64-linux" "x86_64-darwin"];
   }));
 
   ocropus = callPackage ../applications/misc/ocropus { };
@@ -14432,7 +14428,13 @@ in
     withQt5 = false;
   };
 
-  sundials = callPackage ../development/libraries/sundials { };
+  sundials = callPackage ../development/libraries/sundials {
+    python = python3;
+  };
+
+  sundials_2 = callPackage ../development/libraries/sundials/2.x.nix {
+    python = python3;
+  };
 
   sutils = callPackage ../tools/misc/sutils { };