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mafft: enable simple test

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natsukium 2024-04-28 13:57:47 +09:00
parent 4b3081c5e0
commit ce0af18702
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1 changed files with 20 additions and 0 deletions
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20
pkgs/applications/science/biology/mafft/default.nix
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@ -2,6 +2,8 @@
lib,
stdenv,
fetchFromGitLab,
runCommand,
mafft,
}:
stdenv.mkDerivation (finalAttrs: {
@ -25,6 +27,24 @@ stdenv.mkDerivation (finalAttrs: {
"PREFIX=$(out)"
];
passthru.tests = {
simple = runCommand "${finalAttrs.pname}-test" { } ''
mkdir $out
cd ${finalAttrs.src}/test
${lib.getExe mafft} sample > $out/test.fftns2
${lib.getExe mafft} --maxiterate 100 sample > $out/test.fftnsi
${lib.getExe mafft} --globalpair sample > $out/test.gins1
${lib.getExe mafft} --globalpair --maxiterate 100 sample > $out/test.ginsi
${lib.getExe mafft} --localpair sample > $out/test.lins1
${lib.getExe mafft} --localpair --maxiterate 100 sample > $out/test.linsi
diff $out/test.fftns2 sample.fftns2
diff $out/test.fftnsi sample.fftnsi
diff $out/test.gins1 sample.gins1
diff $out/test.ginsi sample.ginsi
diff $out/test.lins1 sample.lins1
'';
};
meta = with lib; {
description = "Multiple alignment program for amino acid or nucleotide sequences";
homepage = "https://mafft.cbrc.jp/alignment/software/";