diff --git a/pkgs/development/libraries/science/biology/ncbi-tools/default.nix b/pkgs/development/libraries/science/biology/ncbi-tools/default.nix new file mode 100644 index 000000000000..78a2d683f2a5 --- /dev/null +++ b/pkgs/development/libraries/science/biology/ncbi-tools/default.nix @@ -0,0 +1,21 @@ +{stdenv, fetchurl, cpio}: + +# Note: may need the C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz (or split out?) + +stdenv.mkDerivation rec { + name = "ncbi_cxx"; + ncbi_version = "Mar_17_2008"; + src = fetchurl { + url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz"; + sha256 = "0mxbmz6gndallz8l5jdslq6illa3hgf31xi2yb984mqm9in485as"; + }; + + configureFlags = "--without-debug --with-bin-release --with-dll --without-static"; + buildInputs = [cpio]; + + meta = { + description = ''NCBI Bioinformatics toolbox''; + homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; + license = "GPL"; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 4b7fdd5a6125..76d20d48ab69 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -6814,6 +6814,10 @@ let pkgs = rec { inherit fetchurl stdenv readline; }; + ncbi_tools = import ../development/libraries/science/biology/ncbi-tools { + inherit fetchurl stdenv cpio; + }; + paml = import ../applications/science/biology/paml { inherit fetchurl stdenv; };