Merge master into staging-next

maintainers/maintainer-list.nix

@@ -8798,6 +8798,16 @@
       fingerprint = "B3C0 DA1A C18B 82E8 CA8B  B1D1 4F62 CD07 CE64 796A";
     }];
   };
+  vincentbernat = {
+    email = "vincent@bernat.ch";
+    github = "vincentbernat";
+    githubId = 631446;
+    name = "Vincent Bernat";
+    keys = [{
+      longkeyid = "rsa4096/0x95A42FE8353525F9";
+      fingerprint = "AEF2 3487 66F3 71C6 89A7  3600 95A4 2FE8 3535 25F9";
+    }];
+  };
   vinymeuh = {
     email = "vinymeuh@gmail.com";
     github = "vinymeuh";

nixos/lib/test-driver/test-driver.py

@@ -3,6 +3,7 @@ import argparse
 import atexit
 import base64
 import io
+import itertools
 import logging
 import os
 import pathlib
@@ -92,10 +93,17 @@ logging.basicConfig(format="%(message)s")
 logger = logging.getLogger("test-driver")
 logger.setLevel(logging.INFO)
 
+machine_colours_iter = (
+    "\x1b[{}m".format(x) for x in itertools.cycle(reversed(range(31, 37)))
+)
+
 
 class MachineLogAdapter(logging.LoggerAdapter):
     def process(self, msg: str, kwargs: Any) -> Tuple[str, Any]:
-        return f"{self.extra['machine']}: {msg}", kwargs
+        return (
+            f"{self.extra['colour_code']}{self.extra['machine']}\x1b[39m: {msg}",
+            kwargs,
+        )
 
 
 def make_command(args: list) -> str:
@@ -172,7 +180,10 @@ class Machine:
         self.socket = None
         self.monitor: Optional[socket.socket] = None
         self.allow_reboot = args.get("allowReboot", False)
-        self.logger = MachineLogAdapter(logger, extra=dict(machine=self.name))
+        self.logger = MachineLogAdapter(
+            logger,
+            extra=dict(machine=self.name, colour_code=next(machine_colours_iter)),
+        )
 
     @staticmethod
     def create_startcommand(args: Dict[str, str]) -> str:

nixos/modules/installer/cd-dvd/sd-image.nix

@@ -108,6 +108,15 @@ in
       '';
     };
 
+    postBuildCommands = mkOption {
+      example = literalExample "'' dd if=\${pkgs.myBootLoader}/SPL of=$img bs=1024 seek=1 conv=notrunc ''";
+      default = "";
+      description = ''
+        Shell commands to run after the image is built.
+        Can be used for boards requiring to dd u-boot SPL before actual partitions.
+      '';
+    };
+
     compressImage = mkOption {
       type = types.bool;
       default = true;
@@ -197,6 +206,9 @@ in
         # Verify the FAT partition before copying it.
         fsck.vfat -vn firmware_part.img
         dd conv=notrunc if=firmware_part.img of=$img seek=$START count=$SECTORS
+
+        ${config.sdImage.postBuildCommands}
+
         if test -n "$compressImage"; then
             zstd -T$NIX_BUILD_CORES --rm $img
         fi

nixos/modules/services/security/physlock.nix

@@ -52,6 +52,14 @@ in
         '';
       };
 
+      lockMessage = mkOption {
+        type = types.str;
+        default = "";
+        description = ''
+          Message to show on physlock login terminal.
+        '';
+      };
+
       lockOn = {
 
         suspend = mkOption {
@@ -111,7 +119,7 @@ in
                 ++ cfg.lockOn.extraTargets;
         serviceConfig = {
           Type = "forking";
-          ExecStart = "${pkgs.physlock}/bin/physlock -d${optionalString cfg.disableSysRq "s"}";
+          ExecStart = "${pkgs.physlock}/bin/physlock -d${optionalString cfg.disableSysRq "s"}${optionalString (cfg.lockMessage != "") " -p \"${cfg.lockMessage}\""}";
         };
       };
 

nixos/modules/services/wayland/cage.nix

@@ -82,6 +82,7 @@ in {
       auth    required pam_unix.so nullok
       account required pam_unix.so
       session required pam_unix.so
+      session required pam_env.so conffile=${config.system.build.pamEnvironment} readenv=0
       session required ${pkgs.systemd}/lib/security/pam_systemd.so
     '';
 

pkgs/applications/audio/faust/faust2.nix

@@ -21,13 +21,13 @@ with stdenv.lib.strings;
 
 let
 
-  version = "unstable-2020-08-03";
+  version = "unstable-2020-08-27";
 
   src = fetchFromGitHub {
     owner = "grame-cncm";
     repo = "faust";
-    rev = "b6045f4592384076d3b383d116e602a95a000eb3";
-    sha256 = "1wcpilwnkc7rrbv9gbkj5hb7kamkh8nrc3r4hbcvbz5ar2pfc6d5";
+    rev = "c10f316fa90f338e248787ebf55e3795c3a0d70e";
+    sha256 = "068pm04ddafbsj2r8akdpqyzb0m8mp9ql0rgi83hcqs4ndr8v7sb";
     fetchSubmodules = true;
   };
 

pkgs/applications/audio/faust/faust2jack.nix

@@ -4,6 +4,7 @@
 , alsaLib
 , opencv2
 , libsndfile
+, which
 }:
 
 faust.wrapWithBuildEnv {
@@ -21,6 +22,7 @@ faust.wrapWithBuildEnv {
     alsaLib
     opencv2
     libsndfile
+    which
   ];
 
 }

pkgs/applications/audio/faust/faust2jaqt.nix

@@ -3,6 +3,7 @@
 , opencv2
 , qt4
 , libsndfile
+, alsaLib
 , which
 }:
 
@@ -20,6 +21,7 @@ faust.wrapWithBuildEnv {
     opencv2
     qt4
     libsndfile
+    alsaLib
     which
   ];
 

pkgs/applications/audio/mooSpace/default.nix

@@ -0,0 +1,35 @@
+{ stdenv, fetchFromGitHub, faust2jaqt, faust2lv2 }:
+stdenv.mkDerivation rec {
+  pname = "mooSpace";
+  version = "unstable-2020-06-10";
+
+  src = fetchFromGitHub {
+    owner = "modularev";
+    repo = pname;
+    rev = "e5440407ea6ef9f7fcca838383b2b9a388c22874";
+    sha256 = "10vsbddf6d7i06040850v8xkmqh3bqawczs29kfgakair809wqxl";
+  };
+
+  buildInputs = [ faust2jaqt faust2lv2 ];
+
+  patchPhase = "mv ${pname}_faust.dsp ${pname}.dsp";
+
+  buildPhase = ''
+    faust2jaqt -time -vec -t 0 ${pname}.dsp
+    faust2lv2  -time -vec -t 0 -gui ${pname}.dsp
+  '';
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp ${pname} $out/bin/
+      mkdir -p $out/lib/lv2
+      cp -r ${pname}.lv2 $out/lib/lv2
+  '';
+
+  meta = {
+    description = "Variable reverb audio effect, jack and lv2";
+    homepage = "https://github.com/modularev/mooSpace";
+    license = stdenv.lib.licenses.gpl3;
+    maintainers = [ stdenv.lib.maintainers.magnetophon ];
+  };
+}

pkgs/applications/editors/code-browser/default.nix

@@ -0,0 +1,48 @@
+{ stdenv
+, fetchurl
+, copper
+, ruby
+, python3
+, qtbase
+, gtk3
+, pkg-config
+, withQt ? false
+, withGtk ? false, wrapQtAppsHook ? null
+}:
+stdenv.mkDerivation rec {
+  pname = "code-browser";
+  version = "7.1.20";
+  src = fetchurl {
+    url = "https://tibleiz.net/download/code-browser-${version}-src.tar.gz";
+    sha256 = "1svi0v3h42h2lrb8c7pjvqc8019v1p20ibsnl48pfhl8d96mmdnz";
+  };
+  postPatch = ''
+    substituteInPlace Makefile --replace "LFLAGS=-no-pie" "LFLAGS=-no-pie -L."
+    substituteInPlace libs/copper-ui/Makefile --replace "moc -o" "${qtbase.dev}/bin/moc -o"
+    patchShebangs .
+  '';
+  nativeBuildInputs = [ copper
+                        python3
+                        ruby
+                        qtbase
+                        gtk3
+                        pkg-config
+                      ]
+  ++ stdenv.lib.optionals withQt [ wrapQtAppsHook ];
+  buildInputs = stdenv.lib.optionals withQt [ qtbase ]
+                ++ stdenv.lib.optionals withGtk [ gtk3 ];
+  makeFlags = [
+    "prefix=$(out)"
+    "COPPER=${copper}/bin/copper-elf64"
+    "with-local-libs"
+    "QINC=${qtbase.dev}/include"
+  ]
+  ++ stdenv.lib.optionals withQt [ "UI=qt" ]
+  ++ stdenv.lib.optionals withGtk [ "UI=gtk" ];
+  meta = with stdenv.lib; {
+    description = "Folding text editor, designed to hierarchically structure any kind of text file and especially source code.";
+    homepage = "https://tibleiz.net/code-browser/";
+    license = licenses.gpl2;
+    platforms = platforms.x86_64;
+  };
+}

pkgs/applications/editors/kakoune/plugins/case.kak.nix

@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitLab }:
+
+stdenv.mkDerivation {
+  name = "case.kak";
+  version = "unstable-2020-04-06";
+
+  src = fetchFromGitLab {
+    owner = "FlyingWombat";
+    repo = "case.kak";
+    rev = "6f1511820aa3abfa118e0f856118adc8113e2185";
+    sha256 = "002njrlwgakqgp74wivbppr9qyn57dn4n5bxkr6k6nglk9qndwdp";
+  };
+
+  installPhase = ''
+    mkdir -p $out/share/kak/autoload/plugins
+    cp -r rc/case.kak $out/share/kak/autoload/plugins
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Ease navigation between opened buffers in Kakoune";
+    homepage = "https://gitlab.com/FlyingWombat/case.kak";
+    license = licenses.unlicense;
+    maintainers = with maintainers; [ eraserhd ];
+    platform = platforms.all;
+  };
+}
+

pkgs/applications/editors/kakoune/plugins/default.nix

@@ -3,6 +3,7 @@
 {
   inherit parinfer-rust;
 
+  case-kak = pkgs.callPackage ./case.kak.nix { };
   kak-ansi = pkgs.callPackage ./kak-ansi.nix { };
   kak-auto-pairs = pkgs.callPackage ./kak-auto-pairs.nix { };
   kak-buffers = pkgs.callPackage ./kak-buffers.nix { };

pkgs/applications/editors/kibi/default.nix

@@ -0,0 +1,25 @@
+{ stdenv
+, fetchFromGitHub
+, rustPlatform
+}:
+
+rustPlatform.buildRustPackage rec {
+  pname = "kibi";
+  version = "0.2.0";
+
+  cargoSha256 = "0zyqzb3k4ak7h58zjbg9b32hz1vgbbn9i9l85j4vd4aw8mhsz0n9";
+
+  src = fetchFromGitHub {
+    owner = "ilai-deutel";
+    repo = "kibi";
+    rev = "v${version}";
+    sha256 = "1cqnzw6gpsmrqcz82zn1x5i6najcr3i7shj0wnqzpwppff9a6yac";
+  };
+
+  meta = with stdenv.lib; {
+    description = "A text editor in ≤1024 lines of code, written in Rust";
+    homepage = "https://github.com/ilai-deutel/kibi";
+    license = licenses.mit;
+    maintainers = with maintainers; [ robertodr ];
+  };
+}

pkgs/applications/editors/vscode/vscode.nix

@@ -11,8 +11,8 @@ let
   archive_fmt = if system == "x86_64-darwin" then "zip" else "tar.gz";
 
   sha256 = {
-    x86_64-linux = "1yar8j6h39gpnq4givxh5cvi336p56sgc8pg32j6sasqk6mxv02c";
-    x86_64-darwin = "1d68xkqkd49z7v4y3230l2v77aw34d7jkdbgj0wnc04kv6n8wx88";
+    x86_64-linux = "1i4vq8a81jgshn9iqkj8rp0yqihq2bjim27c8sh4vl9d6a8a6vcr";
+    x86_64-darwin = "090xj8pq3fdn7dcfrzvgvx906k6gs2xm04xkymz8vpm3a4rq1svn";
   }.${system};
 in
   callPackage ./generic.nix rec {
@@ -21,7 +21,7 @@ in
 
     # Please backport all compatible updates to the stable release.
     # This is important for the extension ecosystem.
-    version = "1.48.1";
+    version = "1.48.2";
     pname = "vscode";
 
     executableName = "code" + lib.optionalString isInsiders "-insiders";

pkgs/applications/editors/vscode/vscodium.nix

@@ -11,8 +11,8 @@ let
   archive_fmt = if system == "x86_64-darwin" then "zip" else "tar.gz";
 
   sha256 = {
-    x86_64-linux = "0f8p25963i7bbm2zxb4ra935maxk3sxims6j873wqwqnzn701diq";
-    x86_64-darwin = "0k8ylcbiqvb0cnvbz3059rbyjqxmvig8zf7bfqgln1w591i411c4";
+    x86_64-linux = "17frdyli375l20mb7sb5bmw000p9cplj4pagmhnb6nibi9wqypdx";
+    x86_64-darwin = "1dh5k36fjdfwhidlsg1grjwy3s9jik3pg6xpdgi6946vzqv1vxll";
   }.${system};
 
   sourceRoot = {
@@ -27,7 +27,7 @@ in
 
     # Please backport all compatible updates to the stable release.
     # This is important for the extension ecosystem.
-    version = "1.48.1";
+    version = "1.48.2";
     pname = "vscodium";
 
     executableName = "codium";

pkgs/applications/graphics/nomacs/default.nix

@@ -18,13 +18,13 @@
 
 mkDerivation rec {
   pname = "nomacs";
-  version = "3.17.2045";
+  version = "3.17.2206";
 
   src = fetchFromGitHub {
     owner = "nomacs";
     repo = "nomacs";
     rev = version;
-    sha256 = "1lchdmmw2sg0xbpcnsk3sxh120xpcv1lh2khf4h5zzdlccbklq7l";
+    sha256 = "1bq7bv4p7w67172y893lvpk90d6fgdpnylynbj2kn8m2hs6khya4";
   };
 
   enableParallelBuilding = true;

pkgs/applications/graphics/viewnior/default.nix

@@ -1,24 +1,38 @@
-{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, gtk2, libpng, exiv2, lcms
+{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, desktop-file-utils, gtk2, libpng, exiv2, lcms
 , intltool, gettext, shared-mime-info, glib, gdk-pixbuf, perl}:
 
 stdenv.mkDerivation rec {
   pname = "viewnior";
-  version = "1.6";
+  version = "1.7";
 
   src = fetchFromGitHub {
-    owner = "xsisqox";
+    owner = "hellosiyan";
     repo = "Viewnior";
     rev = "${pname}-${version}";
-    sha256 = "06ppv3r85l3id4ij6h4y5fgm3nib2587fdrdv9fccyi75zk7fs0p";
+    sha256 = "0y4hk3vq8psba5k615w18qj0kbdfp5w0lm98nv5apy6hmcpwfyig";
   };
 
-  nativeBuildInputs = [ autoreconfHook ];
-  buildInputs =
-    [ pkgconfig gtk2 libpng exiv2 lcms intltool gettext
-      shared-mime-info glib gdk-pixbuf perl
-    ];
+  nativeBuildInputs = [
+    meson
+    ninja
+    pkgconfig
+    desktop-file-utils
+    intltool
+    gettext
+  ];
 
-  meta = {
+  buildInputs = [
+    gtk2
+    libpng
+    exiv2
+    lcms
+    shared-mime-info
+    glib
+    gdk-pixbuf
+    perl
+  ];
+
+  meta = with stdenv.lib; {
     description = "Fast and simple image viewer";
     longDescription =
       '' Viewnior is insipred by big projects like Eye of Gnome, because of it's
@@ -27,13 +41,9 @@ stdenv.mkDerivation rec {
          with the quality of it's functions. The program is made with better integration
          in mind (follows Gnome HIG2).
       '';
-
-    license = stdenv.lib.licenses.gpl3;
-
+    license = licenses.gpl3;
     homepage = "http://siyanpanayotov.com/project/viewnior/";
-
-    maintainers = [ stdenv.lib.maintainers.smironov ];
-
-    platforms = stdenv.lib.platforms.gnu ++ stdenv.lib.platforms.linux;
+    maintainers = with maintainers; [ smironov artturin ];
+    platforms = platforms.gnu ++ platforms.linux;
   };
 }

pkgs/applications/misc/havoc/default.nix

@@ -4,13 +4,13 @@
 stdenv.mkDerivation rec {
 
   pname = "havoc";
-  version = "2019-12-08";
+  version = "0.3.1";
 
   src = fetchFromGitHub {
     owner = "ii8";
     repo = pname;
-    rev = "507446c92ed7bf8380a58c5ba2b14aba5cdf412c";
-    sha256 = "13nfnan1gmy4cqxmqv0rc8a4mcb1g62v73d56hy7z2psv4am7a09";
+    rev = version;
+    sha256 = "1g05r9j6srwz1krqvzckx80jn8fm48rkb4xp68953gy9yp2skg3k";
   };
 
   nativeBuildInputs = [ pkgconfig ];

pkgs/applications/networking/cluster/cni/plugins.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "cni-plugins";
-  version = "0.8.6";
+  version = "0.8.7";
 
   src = fetchFromGitHub {
     owner = "containernetworking";
     repo = "plugins";
     rev = "v${version}";
-    sha256 = "0f1cqxjf26sy1c4aw6y7pyd9lrz0vknby4q5j6xj77a1pab9073m";
+    sha256 = "1sjk0cghldygx1jgx4bqv83qky7shk64n6xkkfxl92f12wyvsq9j";
   };
 
   vendorSha256 = null;
@@ -16,7 +16,7 @@ buildGoModule rec {
   doCheck = false;
 
   buildFlagsArray = [
-    "-ldflags=-X github.com/containernetworking/plugins/pkg/utils/buildversion.BuildVersion=${version}"
+    "-ldflags=-X github.com/containernetworking/plugins/pkg/utils/buildversion.BuildVersion=v${version}"
   ];
 
   subPackages = [

pkgs/applications/networking/cluster/terraform/default.nix

@@ -132,8 +132,8 @@ in rec {
   });
 
   terraform_0_13 = pluggable (generic {
-    version = "0.13.0";
-    sha256 = "0kangddd99ix50w67hi0pwa9js9c0hjxqvrc0lxaa6msjvjsxyyq";
+    version = "0.13.1";
+    sha256 = "0a2sjjb79ziv42ifhplpkvqgsg8gxvr1wdgkhdj59dwahqv64pm2";
     patches = [ ./provider-path.patch ];
     passthru = { inherit plugins; };
   });

pkgs/applications/networking/irc/convos/default.nix

@@ -6,13 +6,13 @@ with stdenv.lib;
 
 perlPackages.buildPerlPackage rec {
   pname = "convos";
-  version = "4.29";
+  version = "4.33";
 
   src = fetchFromGitHub {
     owner = "Nordaaker";
     repo = pname;
     rev = version;
-    sha256 = "07m9lhwgqq77hi4n2zrya7n8apkjv8xi166bxa0n7pnlknlp74ar";
+    sha256 = "0mxq4jpjk4vvhi5lqslj614dvk84iq12rsdyykxr8h9cnjjs57im";
   };
 
   nativeBuildInputs = [ makeWrapper ]
@@ -33,6 +33,10 @@ perlPackages.buildPerlPackage rec {
   '';
 
   preCheck = ''
+    # Remove online test
+    #
+    rm t/web-pwa.t
+
     # A test fails since gethostbyaddr(127.0.0.1) fails to resolve to localhost in
     # the sandbox, we replace the this out from a substitution expression
     #

pkgs/applications/networking/ncgopher/default.nix

@@ -0,0 +1,37 @@
+{ lib
+, fetchFromGitHub
+, rustPlatform
+, pkg-config
+, ncurses6
+, openssl
+, sqlite
+}:
+
+rustPlatform.buildRustPackage rec {
+  pname = "ncgopher";
+  version = "0.1.5";
+
+  src = fetchFromGitHub {
+    owner = "jansc";
+    repo = "ncgopher";
+    rev = "v${version}";
+    sha256 = "1mv89sanmr49b9za95jl5slpq960b246j2054r8xfafzqmbp44af";
+  };
+
+  cargoSha256 = "12r4vgrg2bkr3p61yxcsg02kppg84vn956l0v1vb08i94rxzc8zk";
+
+  nativeBuildInputs = [ pkg-config ];
+  buildInputs = [
+    ncurses6
+    openssl
+    sqlite
+  ];
+
+  meta = with lib; {
+    description = "A gopher and gemini client for the modern internet";
+    homepage = "https://github.com/jansc/ncgopher";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ shamilton ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/version-management/git-and-tools/git-machete/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonApplication rec {
   pname = "git-machete";
-  version = "2.15.3";
+  version = "2.15.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0kpfi1w1jnn7v7mny71jil3sc9mm08lz47l9v3hzgs5z3ham98jb";
+    sha256 = "0n2lrsjs3flfv7650yfhck1c96wkn41cv49440m7csy5yw16zlim";
   };
 
   nativeBuildInputs = [ installShellFiles pbr ];

pkgs/applications/virtualization/singularity/default.nix

@@ -18,11 +18,11 @@ with lib;
 
 buildGoPackage rec {
   pname = "singularity";
-  version = "3.6.1";
+  version = "3.6.2";
 
   src = fetchurl {
     url = "https://github.com/hpcng/singularity/releases/download/v${version}/singularity-${version}.tar.gz";
-    sha256 = "070jj6kbiw23sd2p4xhvmyb8gd83imwgisdf18ahkwp7dq85db3c";
+    sha256 = "16sd08bfa2b1qgpnd3q6k7glw0w1wyrqyf47fz2220yafrryrmyz";
   };
 
   goPackagePath = "github.com/sylabs/singularity";

pkgs/data/fonts/jetbrains-mono/default.nix

@@ -1,14 +1,14 @@
 { lib, fetchzip }:
 
 let
-  version = "2.001";
+  version = "2.002";
 in
 fetchzip {
   name = "JetBrainsMono-${version}";
 
-  url = "https://github.com/JetBrains/JetBrainsMono/releases/download/v${version}/JetBrains.Mono.${version}.zip";
+  url = "https://github.com/JetBrains/JetBrainsMono/releases/download/v${version}/JetBrainsMono-${version}.zip";
 
-  sha256 = "06rh8dssq6qzgb9rri3an2ka24j47c0i8yhgq81yyg471spc39h1";
+  sha256 = "018lhxi9m8aprls6cnpndzdg5snijwzm22m2pxxi6zcqxrcxh8vb";
 
   postFetch = ''
     mkdir -p $out/share/fonts
@@ -21,7 +21,7 @@ fetchzip {
   meta = with lib; {
     description = "A typeface made for developers";
     homepage = "https://jetbrains.com/mono/";
-    license = licenses.asl20;
+    license = licenses.ofl;
     maintainers = [ maintainers.marsam ];
     platforms = platforms.all;
   };

pkgs/data/themes/marwaita/default.nix

@@ -8,13 +8,13 @@
 
 stdenv.mkDerivation rec {
   pname = "marwaita";
-  version = "7.4.2";
+  version = "7.4.3";
 
   src = fetchFromGitHub {
     owner = "darkomarko42";
     repo = pname;
     rev = version;
-    sha256 = "0kq7d8nqp8m0kbh2k9s0yybfdkyfkhbkjsv22lplnzh1p84pnlx7";
+    sha256 = "1g8xyv0najy4lpwa9xplx3ylxvn86dyi58j7qanc6r9yddy85ln9";
   };
 
   buildInputs = [
@@ -33,7 +33,6 @@ stdenv.mkDerivation rec {
     runHook preInstall
     mkdir -p $out/share/themes
     cp -a Marwaita* $out/share/themes
-    rm $out/share/themes/*/COPYING
     runHook postInstall
   '';
 

pkgs/desktops/enlightenment/terminology/default.nix

@@ -1,19 +1,18 @@
-{ stdenv, fetchurl, meson, ninja, pkgconfig, efl, pcre, mesa, makeWrapper }:
+{ stdenv, fetchurl, meson, ninja, pkg-config, efl, pcre, mesa }:
 
 stdenv.mkDerivation rec {
   pname = "terminology";
-  version = "1.8.0";
+  version = "1.8.1";
 
   src = fetchurl {
     url = "http://download.enlightenment.org/rel/apps/${pname}/${pname}-${version}.tar.xz";
-    sha256 = "0pvn8mdzxlx7181xdha32fbr0w8xl7hsnb3hfxr5099g841v1xf6";
+    sha256 = "1fxqjf7g30ix4qxi6366rrax27s3maxq43z2vakwnhz4mp49m9h4";
   };
 
   nativeBuildInputs = [
     meson
     ninja
-    pkgconfig
-    makeWrapper
+    pkg-config
   ];
 
   buildInputs = [

pkgs/desktops/plasma-5/kde-cli-tools.nix

@@ -1,5 +1,5 @@
 {
-  mkDerivation, extra-cmake-modules, kdoctools,
+  lib, mkDerivation, extra-cmake-modules, kdoctools,
   kcmutils, kconfig, kdesu, ki18n, kiconthemes, kinit, kio, kwindowsystem,
   qtsvg, qtx11extras, kactivities, plasma-workspace
 }:
@@ -11,4 +11,18 @@ mkDerivation {
     kcmutils kconfig kdesu ki18n kiconthemes kinit kio kwindowsystem qtsvg
     qtx11extras kactivities plasma-workspace
   ];
+  postInstall = ''
+    # install a symlink in bin so that kdesu can eventually be found in PATH
+    mkdir -p $out/bin
+    ln -s $out/libexec/kf5/kdesu $out/bin
+  '';
+  dontWrapQtApps = true;
+  preFixup = ''
+    for program in $out/bin/*; do
+      wrapQtApp $program
+    done
+
+    # kdesu looks for kdeinit5 in PATH
+    wrapQtApp $out/libexec/kf5/kdesu --suffix PATH : ${lib.getBin kinit}/bin
+  '';
 }

pkgs/desktops/plasma-5/patches/0001-Add-a-logging-category-config-file.patch

@@ -0,0 +1,210 @@
+From e63a0dc2a7b185906a93d60e9d5d6deee4950efc Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?M=C3=A9ven=20Car?= <meven.car@enioka.com>
+Date: Wed, 20 May 2020 14:02:07 +0200
+Subject: [PATCH] Add a logging category config file
+
+Makes powerdevil default logging level Warning
+---
+ CMakeLists.txt                     |  2 ++
+ daemon/CMakeLists.txt              |  6 ++++++
+ daemon/actions/dpms/CMakeLists.txt |  2 +-
+ daemon/backends/CMakeLists.txt     |  6 +++---
+ daemon/powerdevil_debug.cpp        | 21 ---------------------
+ daemon/powerdevil_debug.h          | 26 --------------------------
+ kcmodule/activities/CMakeLists.txt |  2 +-
+ kcmodule/common/CMakeLists.txt     |  2 +-
+ kcmodule/profiles/CMakeLists.txt   |  2 +-
+ powerdevil.categories              |  1 +
+ 10 files changed, 16 insertions(+), 54 deletions(-)
+ delete mode 100644 daemon/powerdevil_debug.cpp
+ delete mode 100644 daemon/powerdevil_debug.h
+ create mode 100644 powerdevil.categories
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 5ded8f5a..52a7318c 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -11,6 +11,7 @@ find_package(ECM ${KF5_MIN_VERSION} REQUIRED NO_MODULE)
+ set(CMAKE_MODULE_PATH ${ECM_MODULE_PATH} ${ECM_KDE_MODULE_DIR} ${CMAKE_CURRENT_SOURCE_DIR}/cmake)
+ 
+ include(ECMSetupVersion)
++include(ECMQtDeclareLoggingCategory)
+ include(FeatureSummary)
+ include(KDEInstallDirs)
+ include(KDECMakeSettings)
+@@ -76,6 +77,7 @@ add_subdirectory(daemon)
+ add_subdirectory(kcmodule)
+ add_subdirectory(doc)
+ 
++install( FILES powerdevil.categories  DESTINATION  ${KDE_INSTALL_LOGGINGCATEGORIESDIR})
+ install( FILES powerdevil.notifyrc DESTINATION ${KDE_INSTALL_KNOTIFY5RCDIR} )
+ 
+ feature_summary(WHAT ALL INCLUDE_QUIET_PACKAGES FATAL_ON_MISSING_REQUIRED_PACKAGES)
+diff --git a/daemon/CMakeLists.txt b/daemon/CMakeLists.txt
+index 33ca655b..96cc9b7b 100644
+--- a/daemon/CMakeLists.txt
++++ b/daemon/CMakeLists.txt
+@@ -48,6 +48,12 @@ set(powerdevilcore_SRCS
+     kwinkscreenhelpereffect.cpp
+ )
+ 
++ecm_qt_declare_logging_category(powerdevilcore_SRCS
++   HEADER powerdevil_debug.h
++   IDENTIFIER POWERDEVIL
++   CATEGORY_NAME org.kde.powerdevil
++   DEFAULT_SEVERITY Warning)
++
+ kconfig_add_kcfg_files(powerdevilcore_SRCS ../PowerDevilSettings.kcfgc)
+ 
+ # Action DBus Adaptors
+diff --git a/daemon/actions/dpms/CMakeLists.txt b/daemon/actions/dpms/CMakeLists.txt
+index f8ca4e20..3b8bd95b 100644
+--- a/daemon/actions/dpms/CMakeLists.txt
++++ b/daemon/actions/dpms/CMakeLists.txt
+@@ -3,7 +3,7 @@ include_directories(${PowerDevil_SOURCE_DIR}/daemon
+                     ${CMAKE_CURRENT_BINARY_DIR})
+ 
+ set(powerdevildpmsaction_SRCS
+-    ${PowerDevil_SOURCE_DIR}/daemon/powerdevil_debug.cpp
++    ${CMAKE_CURRENT_BINARY_DIR}/../../powerdevil_debug.cpp
+     powerdevildpmsaction.cpp
+     abstractdpmshelper.cpp
+     xcbdpmshelper.cpp
+diff --git a/daemon/backends/CMakeLists.txt b/daemon/backends/CMakeLists.txt
+index 89400446..05c4263e 100644
+--- a/daemon/backends/CMakeLists.txt
++++ b/daemon/backends/CMakeLists.txt
+@@ -4,7 +4,7 @@ include_directories(${CMAKE_CURRENT_SOURCE_DIR}/upower
+                     ${X11_Xrandr_INCLUDE_PATH})
+ 
+ set(powerdevilupowerbackend_SRCS
+-    ${PowerDevil_SOURCE_DIR}/daemon/powerdevil_debug.cpp
++    ${CMAKE_CURRENT_BINARY_DIR}/../powerdevil_debug.cpp
+     upower/upowersuspendjob.cpp
+     upower/login1suspendjob.cpp
+     upower/powerdevilupowerbackend.cpp
+@@ -33,14 +33,14 @@ ${CMAKE_CURRENT_SOURCE_DIR}/upower/dbus/org.freedesktop.UPower.KbdBacklight.xml
+ upower_kbdbacklight_interface)
+ 
+ ## backlight helper executable
+-add_executable(backlighthelper upower/backlighthelper.cpp ${PowerDevil_SOURCE_DIR}/daemon/powerdevil_debug.cpp ${backlighthelper_mocs})
++add_executable(backlighthelper upower/backlighthelper.cpp ${CMAKE_CURRENT_BINARY_DIR}/../powerdevil_debug.cpp ${backlighthelper_mocs})
+ target_link_libraries(backlighthelper Qt5::Core KF5::AuthCore KF5::I18n)
+ install(TARGETS backlighthelper DESTINATION ${KAUTH_HELPER_INSTALL_DIR})
+ kauth_install_helper_files(backlighthelper org.kde.powerdevil.backlighthelper root)
+ kauth_install_actions(org.kde.powerdevil.backlighthelper ${CMAKE_CURRENT_SOURCE_DIR}/upower/backlight_helper_actions.actions)
+ 
+ ## discrete gpu helper executable
+-add_executable(discretegpuhelper upower/discretegpuhelper.cpp ${PowerDevil_SOURCE_DIR}/daemon/powerdevil_debug.cpp ${discretegpuhelper_mocs})
++add_executable(discretegpuhelper upower/discretegpuhelper.cpp ${CMAKE_CURRENT_BINARY_DIR}/../powerdevil_debug.cpp ${discretegpuhelper_mocs})
+ target_link_libraries(discretegpuhelper Qt5::Core KF5::AuthCore)
+ install(TARGETS discretegpuhelper DESTINATION ${KAUTH_HELPER_INSTALL_DIR})
+ kauth_install_helper_files(discretegpuhelper org.kde.powerdevil.discretegpuhelper root)
+diff --git a/daemon/powerdevil_debug.cpp b/daemon/powerdevil_debug.cpp
+deleted file mode 100644
+index 86172c1b..00000000
+--- a/daemon/powerdevil_debug.cpp
++++ /dev/null
+@@ -1,21 +0,0 @@
+-/*  This file is part of the KDE project
+-    Copyright (C) 2014 Hrvoje Senjan <hrvoje.senjan@gmail.com>
+-
+-    This library is free software; you can redistribute it and/or
+-    modify it under the terms of the GNU Library General Public
+-    License as published by the Free Software Foundation; either
+-    version 2 of the License, or (at your option) any later version.
+-
+-    This library is distributed in the hope that it will be useful,
+-    but WITHOUT ANY WARRANTY; without even the implied warranty of
+-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+-    Library General Public License for more details.
+-
+-    You should have received a copy of the GNU Library General Public License
+-    along with this library; see the file COPYING.LIB.  If not, write to
+-    the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+-    Boston, MA 02110-1301, USA.
+-*/
+-
+-#include "powerdevil_debug.h"
+-Q_LOGGING_CATEGORY(POWERDEVIL, "powerdevil")
+diff --git a/daemon/powerdevil_debug.h b/daemon/powerdevil_debug.h
+deleted file mode 100644
+index fcd9c10f..00000000
+--- a/daemon/powerdevil_debug.h
++++ /dev/null
+@@ -1,26 +0,0 @@
+-/*  This file is part of the KDE project
+-    Copyright (C) 2014 Hrvoje Senjan <hrvoje.senjan@gmail.com>
+-
+-    This library is free software; you can redistribute it and/or
+-    modify it under the terms of the GNU Library General Public
+-    License as published by the Free Software Foundation; either
+-    version 2 of the License, or (at your option) any later version.
+-
+-    This library is distributed in the hope that it will be useful,
+-    but WITHOUT ANY WARRANTY; without even the implied warranty of
+-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+-    Library General Public License for more details.
+-
+-    You should have received a copy of the GNU Library General Public License
+-    along with this library; see the file COPYING.LIB.  If not, write to
+-    the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+-    Boston, MA 02110-1301, USA.
+-*/
+-
+-#ifndef PROCESSCORE_DEBUG_H
+-#define PROCESSCORE_DEBUG_H
+-
+-#include <QLoggingCategory>
+-Q_DECLARE_LOGGING_CATEGORY(POWERDEVIL)
+-
+-#endif
+diff --git a/kcmodule/activities/CMakeLists.txt b/kcmodule/activities/CMakeLists.txt
+index 41a6da48..6e248e91 100644
+--- a/kcmodule/activities/CMakeLists.txt
++++ b/kcmodule/activities/CMakeLists.txt
+@@ -1,7 +1,7 @@
+ add_definitions(-DTRANSLATION_DOMAIN=\"powerdevilactivitiesconfig\")
+ 
+ set( kcm_powerdevil_activities_SRCS
+-     ${PowerDevil_SOURCE_DIR}/daemon/powerdevil_debug.cpp
++     ${CMAKE_CURRENT_BINARY_DIR}/../../daemon/powerdevil_debug.cpp
+      activitypage.cpp
+      activitywidget.cpp
+      ../common/ErrorOverlay.cpp
+diff --git a/kcmodule/common/CMakeLists.txt b/kcmodule/common/CMakeLists.txt
+index ca483fa7..400b7746 100644
+--- a/kcmodule/common/CMakeLists.txt
++++ b/kcmodule/common/CMakeLists.txt
+@@ -1,7 +1,7 @@
+ add_definitions(-DTRANSLATION_DOMAIN=\"libpowerdevilcommonconfig\")
+ 
+ set( powerdevil_config_common_private_SRCS
+-    ${PowerDevil_SOURCE_DIR}/daemon/powerdevil_debug.cpp
++    ${CMAKE_CURRENT_BINARY_DIR}/../../daemon/powerdevil_debug.cpp
+     actionconfigwidget.cpp
+     actioneditwidget.cpp
+     ErrorOverlay.cpp
+diff --git a/kcmodule/profiles/CMakeLists.txt b/kcmodule/profiles/CMakeLists.txt
+index ac5c96e0..32279089 100644
+--- a/kcmodule/profiles/CMakeLists.txt
++++ b/kcmodule/profiles/CMakeLists.txt
+@@ -1,7 +1,7 @@
+ add_definitions(-DTRANSLATION_DOMAIN=\"powerdevilprofilesconfig\")
+ 
+ set( kcm_powerdevil_profiles_SRCS
+-     ${PowerDevil_SOURCE_DIR}/daemon/powerdevil_debug.cpp
++     ${CMAKE_CURRENT_BINARY_DIR}/../../daemon/powerdevil_debug.cpp
+      EditPage.cpp
+      ${PowerDevil_SOURCE_DIR}/daemon/powerdevilprofilegenerator.cpp
+ )
+diff --git a/powerdevil.categories b/powerdevil.categories
+new file mode 100644
+index 00000000..3147de54
+--- /dev/null
++++ b/powerdevil.categories
+@@ -0,0 +1 @@
++org.kde.powerdevil Powerdevil DEFAULT_SEVERITY [WARNING] IDENTIFIER [POWERDEVIL]
+-- 
+2.25.4
+

pkgs/desktops/plasma-5/powerdevil.nix

@@ -27,5 +27,10 @@ mkDerivation {
       url = "https://invent.kde.org/plasma/powerdevil/-/commit/fcb26be2fb279e6ad3b7b814d26a5921d16201eb.patch";
       sha256 = "0gdyaa0nd1c1d6x2h0m933lascm8zm5sikd99wxmkf7hhaby6k2s";
     })
+    # This is a backport of
+    # https://invent.kde.org/plasma/powerdevil/-/commit/c7590f9065ec9547b7fabad77a548bbc0c693113.patch,
+    # which doesn't apply cleanly to 5.17.5.  It should make it into 5.20, so
+    # this patch can be removed when we upgrade to 5.20.
+    ./patches/0001-Add-a-logging-category-config-file.patch
   ];
 }

pkgs/development/compilers/mit-scheme/default.nix

@@ -2,12 +2,11 @@
   enableX11 ? false, xlibsWrapper ? null }:
 
 let
-  version = "9.2";
+  version = "10.1.10";
   bootstrapFromC = ! (stdenv.isi686 || stdenv.isx86_64);
 
   arch = if      stdenv.isi686   then "-i386"
-         else if stdenv.isx86_64 then "-x86-64"
-         else                         "";
+         else                         "-x86-64";
 in
 stdenv.mkDerivation {
   name = if enableX11 then "mit-scheme-x11-${version}" else "mit-scheme-${version}";
@@ -20,14 +19,10 @@ stdenv.mkDerivation {
     if stdenv.isi686
     then fetchurl {
       url = "mirror://gnu/mit-scheme/stable.pkg/${version}/mit-scheme-${version}-i386.tar.gz";
-      sha256 = "1fmlpnhf5a75db93phajh4ysbdgrgl72v45lk3kznriprl0a7jc6";
-    } else if stdenv.isx86_64
-    then fetchurl {
+      sha256 = "117lf06vcdbaa5432hwqnskpywc6x8ai0gj99h480a4wzkp3vhy6";
+  } else fetchurl {
       url = "mirror://gnu/mit-scheme/stable.pkg/${version}/mit-scheme-${version}-x86-64.tar.gz";
-      sha256 = "1skzxxhr0iq96bf0j5m7mvf3i4sppfyfa6gpqn34mwgkw1fx8274";
-    } else fetchurl {
-      url = "mirror://gnu/mit-scheme/stable.pkg/${version}/mit-scheme-c-${version}.tar.gz";
-      sha256 = "0w5ib5vsidihb4hb6fma3sp596ykr8izagm57axvgd6lqzwicsjg";
+      sha256 = "1rljv6iddrbssm91c0nn08myj92af36hkix88cc6qwq38xsxs52g";
     };
 
   buildInputs = if enableX11 then [xlibsWrapper] else [];

pkgs/development/compilers/ocaml/4.11.nix

@@ -1,6 +1,6 @@
 import ./generic.nix {
   major_version = "4";
   minor_version = "11";
-  patch_version = "0+beta3";
-  sha256 = "18lpgirxil00pgy805cyi97v6ycmg93sdvbkc60i35ili030v1f7";
+  patch_version = "0";
+  sha256 = "04b13yfismkqh21ag641q9dl0i602khgh4427g1a7pb77c4skr7z";
 }

pkgs/development/coq-modules/coq-elpi/default.nix

@@ -2,14 +2,14 @@
 
 let params = {
   "8.11" = rec {
-    version = "1.5.0";
+    version = "1.6.0_8.11";
     rev = "v${version}";
-    sha256 = "0dlw869j6ib58i8fhbr7x3hq2cy088arihhfanv8i08djqml6g8x";
+    sha256 = "0ahxjnzmd7kl3gl38kyjqzkfgllncr2ybnw8bvgrc6iddgga7bpq";
   };
   "8.12" = rec {
-    version = "1.5.1";
+    version = "1.6.0";
     rev = "v${version}";
-    sha256 = "1znjc8c8rivsawmz5bgm9ddl69p62p2pwxphvpap1gfmi5cp8lwi";
+    sha256 = "0kf99i43mlf750fr7fric764mm495a53mg5kahnbp6zcjcxxrm0b";
   };
 };
   param = params.${coq.coq-version};

pkgs/development/libraries/intel-gmmlib/default.nix

@@ -20,6 +20,6 @@ stdenv.mkDerivation rec {
     license = licenses.mit;
     description = "Intel Graphics Memory Management Library";
     platforms = [ "x86_64-linux" ];
-    maintainers = with maintainers; [ jfrankenau ];
+    maintainers = with maintainers; [ danieldk ];
   };
 }

pkgs/development/libraries/kde-frameworks/default.nix

@@ -150,7 +150,7 @@ let
       kdeclarative = callPackage ./kdeclarative.nix {};
       kded = callPackage ./kded.nix {};
       kdesignerplugin = callPackage ./kdesignerplugin.nix {};
-      kdesu = callPackage ./kdesu.nix {};
+      kdesu = callPackage ./kdesu {};
       kdewebkit = callPackage ./kdewebkit.nix {};
       kemoticons = callPackage ./kemoticons.nix {};
       kglobalaccel = callPackage ./kglobalaccel.nix {};

pkgs/development/libraries/kde-frameworks/kdesu/default.nix

@@ -11,4 +11,5 @@ mkDerivation {
   buildInputs = [ kcoreaddons ki18n kpty kservice qtbase ];
   propagatedBuildInputs = [ kpty ];
   outputs = [ "out" "dev" ];
+  patches = [ ./kdesu-search-for-wrapped-daemon-first.patch ];
 }

pkgs/development/libraries/kde-frameworks/kdesu/kdesu-search-for-wrapped-daemon-first.patch

@@ -0,0 +1,38 @@
+From 01af4d2a098e5819c09bca37568941dcd4b89d0b Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
+Date: Thu, 16 Jul 2020 13:21:42 -0300
+Subject: [PATCH] Search for the daemon first in /run/wrappers/bin
+
+If looking first in libexec, the eventually wrapped one in
+/run/wrappers/bin can not be found.
+---
+ src/client.cpp | 13 ++++++++-----
+ 1 file changed, 8 insertions(+), 5 deletions(-)
+
+diff --git a/src/client.cpp b/src/client.cpp
+index 44fbacd..6b5abf5 100644
+--- a/src/client.cpp
++++ b/src/client.cpp
+@@ -378,11 +378,14 @@ int KDEsuClient::stopServer()
+ 
+ static QString findDaemon()
+ {
+-    QString daemon = QFile::decodeName(CMAKE_INSTALL_FULL_LIBEXECDIR_KF5 "/kdesud");
+-    if (!QFile::exists(daemon)) { // if not in libexec, find it in PATH
+-        daemon = QStandardPaths::findExecutable(QStringLiteral("kdesud"));
+-        if (daemon.isEmpty()) {
+-            qWarning() << "kdesud daemon not found.";
++    QString daemon = QFile::decodeName("/run/wrappers/bin/kdesud");
++    if (!QFile::exists(daemon)) { // if not in wrappers
++        daemon = QFile::decodeName(CMAKE_INSTALL_FULL_LIBEXECDIR_KF5 "/kdesud");
++        if (!QFile::exists(daemon)) { // if not in libexec, find it in PATH
++            daemon = QStandardPaths::findExecutable(QStringLiteral("kdesud"));
++            if (daemon.isEmpty()) {
++                qWarning() << "kdesud daemon not found.";
++            }
+         }
+     }
+     return daemon;
+-- 
+2.27.0
+

pkgs/development/libraries/qt-5/5.12/default.nix

@@ -101,11 +101,17 @@ let
       ./qtwebengine-darwin-no-platform-check.patch
       ./qtwebengine-darwin-fix-failed-static-assertion.patch
     ];
-    qtwebkit = [ ./qtwebkit.patch ]
-      ++ optionals stdenv.isDarwin [
-        ./qtwebkit-darwin-no-readline.patch
-        ./qtwebkit-darwin-no-qos-classes.patch
-      ];
+    qtwebkit = [
+      (fetchpatch {
+        name = "qtwebkit-bison-3.7-build.patch";
+        url = "https://github.com/qtwebkit/qtwebkit/commit/d92b11fea65364fefa700249bd3340e0cd4c5b31.patch";
+        sha256 = "0h8ymfnwgkjkwaankr3iifiscsvngqpwb91yygndx344qdiw9y0n";
+      })
+      ./qtwebkit.patch
+    ] ++ optionals stdenv.isDarwin [
+      ./qtwebkit-darwin-no-readline.patch
+      ./qtwebkit-darwin-no-qos-classes.patch
+    ];
     qttools = [ ./qttools.patch ];
   };
 

pkgs/development/libraries/qt-5/5.14/default.nix

@@ -72,11 +72,17 @@ let
     qtserialport = [ ./qtserialport.patch ];
     qtwebengine = [ ]
       ++ optional stdenv.isDarwin ./qtwebengine-darwin-no-platform-check.patch;
-    qtwebkit = [ ./qtwebkit.patch ]
-      ++ optionals stdenv.isDarwin [
-        ./qtwebkit-darwin-no-readline.patch
-        ./qtwebkit-darwin-no-qos-classes.patch
-      ];
+    qtwebkit = [
+      (fetchpatch {
+        name = "qtwebkit-bison-3.7-build.patch";
+        url = "https://github.com/qtwebkit/qtwebkit/commit/d92b11fea65364fefa700249bd3340e0cd4c5b31.patch";
+        sha256 = "0h8ymfnwgkjkwaankr3iifiscsvngqpwb91yygndx344qdiw9y0n";
+      })
+      ./qtwebkit.patch
+    ] ++ optionals stdenv.isDarwin [
+      ./qtwebkit-darwin-no-readline.patch
+      ./qtwebkit-darwin-no-qos-classes.patch
+    ];
     qttools = [ ./qttools.patch ];
   };
 

pkgs/development/libraries/science/math/petsc/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "petsc";
-  version = "3.13.3";
+  version = "3.13.4";
 
   src = fetchurl {
     url = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${version}.tar.gz";
-    sha256 = "0fhydhws57hvxv7mkldlicm2xmmnb9f4nhd8n16idxg4snck38vz";
+    sha256 = "1n2paqw5c0ja392s1qhp7q2ypwav8s5drxxz2w5m2cn31vbspy1c";
   };
 
   nativeBuildInputs = [ blas gfortran gfortran.cc.lib lapack python ];

pkgs/development/ocaml-modules/elpi/default.nix

@@ -1,19 +1,19 @@
 { lib, fetchzip, buildDunePackage, camlp5
-, ppx_tools_versioned, ppx_deriving, re
+, ppxlib, ppx_deriving, re, perl, ncurses
 }:
 
 buildDunePackage rec {
   pname = "elpi";
-  version = "1.11.2";
+  version = "1.11.4";
 
    src = fetchzip {
      url = "https://github.com/LPCIC/elpi/releases/download/v${version}/elpi-v${version}.tbz";
-     sha256 = "15hamy9ifr05kczadwh3yj2gmr12a9z1jwppmp5yrns0vykjbj76";
+     sha256 = "1hmjp2z52j17vwhhdkj45n9jx11jxkdg2dwa0n04yyw0qqy4m7c1";
    };
 
   minimumOCamlVersion = "4.04";
 
-  buildInputs = [ ppx_tools_versioned ];
+  buildInputs = [ perl ncurses ppxlib ];
 
   propagatedBuildInputs = [ camlp5 ppx_deriving re ];
 
@@ -24,5 +24,9 @@ buildDunePackage rec {
     homepage = "https://github.com/LPCIC/elpi";
   };
 
+  postPatch = ''
+    substituteInPlace elpi_REPL.ml --replace "tput cols" "${ncurses}/bin/tput cols"
+  '';
+
   useDune2 = true;
 }

pkgs/development/python-modules/ansiconv/default.nix

@@ -9,7 +9,7 @@ buildPythonPackage rec {
     repo = pname;
     rev = "v${version}";
     sha256 = "0ljfpl8x069arzginvpi1v6hlaq4x2qpjqj01qds2ylz33scq8r4";
-  };  
+  };
 
   checkInputs = [ pytest ];
 
@@ -21,4 +21,3 @@ buildPythonPackage rec {
   };
 
 }
-

pkgs/development/python-modules/aria2p/default.nix

@@ -15,7 +15,7 @@ buildPythonPackage rec {
     rev = "v${version}";
     sha256 = "1inak3y2win58zbzykfzy6xp00f276sqsz69h2nfsd93mpr74wf6";
   };
-  
+
   nativeBuildInputs = [ poetry ];
 
   preBuild = ''

pkgs/development/python-modules/atlassian-python-api/default.nix

@@ -17,16 +17,16 @@
 buildPythonPackage rec {
   pname = "atlassian-python-api";
   version = "1.16.0";
-  
+
   src = fetchPypi {
     inherit pname version;
     sha256 = "1sp036192vdl5nqifcswg2j838vf8i9k8bfd0w4qh1vz4f0pjz7y";
   };
-  
+
   checkInputs = [ pytestrunner pytest ];
-  
+
   propagatedBuildInputs = [ oauthlib requests requests_oauthlib six ];
-  
+
   meta = with lib; {
     description = "Python Atlassian REST API Wrapper";
     homepage = "https://github.com/atlassian-api/atlassian-python-api";
@@ -34,4 +34,3 @@ buildPythonPackage rec {
     maintainers = [ maintainers.arnoldfarkas ];
   };
 }
-

pkgs/development/python-modules/audiotools/default.nix

@@ -25,4 +25,4 @@ buildPythonPackage rec {
     homepage = "http://audiotools.sourceforge.net/";
     license = lib.licenses.gpl2Plus;
   };
-}
+}

pkgs/development/python-modules/azure-mgmt-cosmosdb/default.nix

@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-cosmosdb";
-  version = "0.16.0";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "308aeabdff61bf35ceb7a3d6dd19f1ab69a041bd92c85ee24d98a624968697f3";
+    sha256 = "e08b37aea8e6b62596f55f9beb924e1759b2dc424c180ab2e752153a2b01b723";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/azure-mgmt-hdinsight/default.nix

@@ -5,13 +5,13 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.6.0";
+  version = "1.7.0";
   pname = "azure-mgmt-hdinsight";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b1d06279307c41da5e0a5c9722aa6b36ce3b2c212534a54767210639451b9800";
+    sha256 = "9d1120bd9760687d87594ec5ce9257b7335504afbe55b3cda79462c1e07a095b";
     extension = "zip";
   };
 

pkgs/development/python-modules/batchgenerators/default.nix

@@ -25,7 +25,7 @@ buildPythonPackage rec {
     repo = pname;
     rev = "v${version}";
     sha256 = "0cc3i4wznqb7lk8n6jkprvkpsby6r7khkxqwn75k8f01mxgjfpvf";
-    
+
   };
 
   patches = [

pkgs/development/python-modules/bayesian-optimization/default.nix

@@ -22,7 +22,7 @@ buildPythonPackage rec {
     scikitlearn
     scipy
   ];
-  
+
   checkInputs = [ pytest ];
   checkPhase = ''
     pytest tests

pkgs/development/python-modules/bespon/default.nix

@@ -15,7 +15,7 @@ buildPythonPackage rec {
   propagatedBuildInputs = [ ];
   # upstream doesn't contain tests
   doCheck = false;
-  
+
   pythonImportsCheck = [ "bespon" ];
   meta = with stdenv.lib; {
     description = "Encodes and decodes data in the BespON format.";

pkgs/development/python-modules/bitarray/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "bitarray";
-  version = "1.5.1";
+  version = "1.5.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "45bba08bc142781ec7e18a847735219390808f9b6279c356252edddaee1f5fcd";
+    sha256 = "567631fc922b1c2c528c376795f18dcc0604d18702e0b8b50e8e35f0474214a5";
   };
 
   meta = with lib; {

pkgs/development/python-modules/breathe/default.nix

@@ -1,13 +1,13 @@
 { lib, fetchPypi, buildPythonPackage, docutils, six, sphinx, isPy3k, isPy27 }:
 
 buildPythonPackage rec {
-  version = "4.19.2";
+  version = "4.20.0";
   pname = "breathe";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1mzcggfr61lqkn6sghg842ah9slfjr0ikc776vbx60iqqw9l1gvn";
+    sha256 = "d7e1e1ee9b0615423b7e9abc64f0afe12e7bcf32c817a8fd1d9c8c3c4b3d71c9";
   };
 
   propagatedBuildInputs = [ docutils six sphinx ];

pkgs/development/python-modules/brotlipy/default.nix

@@ -33,4 +33,4 @@ buildPythonPackage rec {
     homepage = "https://github.com/python-hyper/brotlipy/";
     license = lib.licenses.mit;
   };
-}
+}

pkgs/development/python-modules/build/default.nix

@@ -43,4 +43,4 @@ buildPythonPackage rec {
     description = "A simple, correct PEP517 package builder";
     license = lib.licenses.mit;
   };
-}
+}

pkgs/development/python-modules/certipy/default.nix

@@ -14,7 +14,7 @@ buildPythonPackage rec {
   };
 
   propagatedBuildInputs = [ pyopenssl ];
-  
+
   doCheck = false; #no tests were included
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/cftime/default.nix

@@ -28,4 +28,4 @@ buildPythonPackage rec {
     description = "Time-handling functionality from netcdf4-python";
   };
 
-}
+}

pkgs/development/python-modules/channels-redis/default.nix

@@ -34,7 +34,7 @@ buildPythonPackage rec {
   #   pytest
   #   pytest-asyncio
   # ];
-  # 
+  #
   # # Fails with : ConnectionRefusedError: [Errno 111] Connect call failed ('127.0.0.1', 6379)
   # # (even with a local redis instance running)
   # checkPhase = ''

pkgs/development/python-modules/configparser/4.nix

@@ -23,4 +23,4 @@ buildPythonPackage rec {
     license = licenses.mit;
     homepage = "https://github.com/jaraco/configparser";
   };
-}
+}

pkgs/development/python-modules/cookiecutter/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
   propagatedBuildInputs = [
     jinja2 future binaryornot click whichcraft poyo jinja2_time requests python-slugify
   ];
-  
+
   # requires network access for cloning git repos
   doCheck = false;
   checkPhase = ''

pkgs/development/python-modules/cppy/default.nix

@@ -24,4 +24,4 @@ buildPythonPackage rec {
     homepage = "https://github.com/nucleic/cppy";
     license = lib.licenses.bsd3;
   };
-}
+}

pkgs/development/python-modules/cupy/default.nix

@@ -20,7 +20,7 @@ buildPythonPackage rec {
 
   preConfigure = ''
       export CUDA_PATH=${cudatoolkit}
-  ''; 
+  '';
 
   propagatedBuildInputs = [
     cudatoolkit

pkgs/development/python-modules/cvxpy/default.nix

@@ -11,18 +11,19 @@
 , scs
 , six
   # Check inputs
+, pytestCheckHook
 , nose
 }:
 
 buildPythonPackage rec {
   pname = "cvxpy";
-  version = "1.1.4";
+  version = "1.1.5";
 
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1f37da2f891508ebc2bbb2b75c46a2076be39a60a45c8a88261e000e8aabeef2";
+    sha256 = "7c826a874db2e4cefe54e63ebd3a3763d0d72e55a17c7d1cfec80008a87b8d81";
   };
 
   propagatedBuildInputs = [
@@ -36,15 +37,19 @@ buildPythonPackage rec {
     six
   ];
 
-  checkInputs = [ nose ];
-  checkPhase = ''
-    nosetests cvxpy
-  '';
+  checkInputs = [ pytestCheckHook nose ];
+  pytestFlagsArray = [ "./cvxpy" ];
+  # Disable the slowest benchmarking tests, cuts test time in half
+  disabledTests = [
+    "test_tv_inpainting"
+    "test_diffcp_sdp_example"
+  ];
 
   meta = with lib; {
     description = "A domain-specific language for modeling convex optimization problems in Python.";
     homepage = "https://www.cvxpy.org/";
     downloadPage = "https://github.com/cvxgrp/cvxpy/releases";
+    changelog = "https://github.com/cvxgrp/cvxpy/releases/tag/v${version}";
     license = licenses.asl20;
     maintainers = with maintainers; [ drewrisinger ];
   };

pkgs/development/python-modules/django-auth-ldap/default.nix

@@ -1,7 +1,7 @@
 { stdenv
 , buildPythonPackage
 , fetchPypi, isPy27
-, ldap , django 
+, ldap , django
 , mock
 }:
 
@@ -14,8 +14,8 @@ buildPythonPackage rec {
     sha256 = "11af1773b08613339d2c3a0cec1308a4d563518f17b1719c3759994d0b4d04bf";
   };
 
-  propagatedBuildInputs = [ ldap django ]; 
-  checkInputs = [ mock ]; 
+  propagatedBuildInputs = [ ldap django ];
+  checkInputs = [ mock ];
 
   # django.core.exceptions.ImproperlyConfigured: Requested setting INSTALLED_APPS, but settings are not configured. You must either define the environment variable DJANGO_SETTINGS_MODULE or call settings.configure() before accessing settings
   doCheck = false;

pkgs/development/python-modules/django-dynamic-preferences/default.nix

@@ -11,7 +11,7 @@ buildPythonPackage rec {
     sha256 = "2310291c7f40606be045938d65e117383549aa8a979c6c4b700464c6a6204a34";
   };
 
-  propagatedBuildInputs = [ six django persisting-theory ]; 
+  propagatedBuildInputs = [ six django persisting-theory ];
 
   # django.core.exceptions.ImproperlyConfigured: Requested setting DYNAMIC_PREFERENCES, but settings are not configured. You must either define the environment variable DJANGO_SETTINGS_MODULE or call settings.configure() before accessing settings
   doCheck = false;

pkgs/development/python-modules/django-multiselectfield/default.nix

@@ -23,4 +23,4 @@ buildPythonPackage rec {
     homepage = "https://github.com/goinnn/django-multiselectfield";
     license = lib.licenses.lgpl3;
   };
-}
+}

pkgs/development/python-modules/djangorestframework-simplejwt/default.nix

@@ -3,17 +3,17 @@
 buildPythonPackage rec {
   pname = "djangorestframework_simplejwt";
   version = "4.4.0";
-  
+
   src = fetchPypi {
     inherit pname version;
     sha256 = "c315be70aa12a5f5790c0ab9acd426c3a58eebea65a77d0893248c5144a5080c";
   };
-  
+
   propagatedBuildInputs = [ django djangorestframework pyjwt ];
-  
+
   # Test raises django.core.exceptions.ImproperlyConfigured
   doCheck = false;
-  
+
   meta = with lib; {
     description = "A minimal JSON Web Token authentication plugin for Django REST Framework";
     homepage = "https://github.com/davesque/django-rest-framework-simplejwt";

pkgs/development/python-modules/fixtures/default.nix

@@ -27,4 +27,4 @@ buildPythonPackage rec {
     homepage = "https://pypi.python.org/pypi/fixtures";
     license = lib.licenses.asl20;
   };
-}
+}

pkgs/development/python-modules/flask-marshmallow/default.nix

@@ -10,7 +10,7 @@ buildPythonPackage rec {
     homepage = "https://github.com/marshmallow-code/flask-marshmallow";
     description = "Flask + marshmallow for beautiful APIs";
     license = lib.licenses.mit;
-  }; 
+  };
 
   src = fetchPypi {
     inherit pname version;

pkgs/development/python-modules/fluent-logger/default.nix

@@ -10,7 +10,7 @@ buildPythonPackage rec {
   };
 
   propagatedBuildInputs = [ msgpack ];
-  
+
   # Tests fail because absent in package
   doCheck = false;
 

pkgs/development/python-modules/fuse-python/default.nix

@@ -11,7 +11,7 @@ buildPythonPackage rec {
 
   buildInputs = [ fuse ];
   nativeBuildInputs = [ pkgconfig ];
-  
+
   # no tests in the Pypi archive
   doCheck = false;
 
@@ -22,4 +22,3 @@ buildPythonPackage rec {
     maintainers = with maintainers; [ psyanticy ];
   };
 }
-

pkgs/development/python-modules/globus-sdk/default.nix

@@ -23,11 +23,11 @@ buildPythonPackage rec {
 
   # No tests in archive
   doCheck = false;
-  
+
   checkInputs = [ flake8 nose2 mock ];
-  
+
   propagatedBuildInputs = [ requests pyjwt  ];
- 
+
   meta = with lib; {
     description = "A convenient Pythonic interface to Globus REST APIs, including the Transfer API and the Globus Auth API.";
     homepage =  "https://github.com/globus/globus-sdk-python";

pkgs/development/python-modules/graphviz/default.nix

@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "graphviz";
-  version = "0.10.1";
+  version = "0.14.1";
 
   # patch does not apply to PyPI tarball due to different line endings
   src = fetchFromGitHub {
     owner = "xflr6";
     repo = "graphviz";
     rev = version;
-    sha256 = "1vqk4xy45c72la56j24z9jmjp5a0aa2k32fybnlbkzqjvvbl72d8";
+    sha256 = "02bdiac5x93f2mjw5kpgs6kv81hzg07y0mw1nxvhyg8aignzmh3c";
   };
 
   patches = [
@@ -30,9 +30,9 @@ buildPythonPackage rec {
     })
   ];
 
-  # Fontconfig error: Cannot load default config file 
-  FONTCONFIG_FILE = makeFontsConf { 
-    fontDirectories = [ freefont_ttf ]; 
+  # Fontconfig error: Cannot load default config file
+  FONTCONFIG_FILE = makeFontsConf {
+    fontDirectories = [ freefont_ttf ];
   };
 
   checkInputs = [ mock pytest pytest-mock pytestcov ];

pkgs/development/python-modules/graphviz/hardcode-graphviz-path.patch

@@ -1,38 +1,39 @@
 diff --git a/graphviz/backend.py b/graphviz/backend.py
-index 704017b..fe4aefe 100644
+index 6f4cc0c..bc4781e 100644
 --- a/graphviz/backend.py
 +++ b/graphviz/backend.py
-@@ -114,7 +114,7 @@ def command(engine, format, filepath=None, renderer=None, formatter=None):
-     suffix = '.'.join(reversed(format_arg))
-     format_arg = ':'.join(format_arg)
+@@ -122,7 +122,7 @@ def command(engine, format_, filepath=None, renderer=None, formatter=None):
+         raise ValueError('unknown formatter: %r' % formatter)
  
--    cmd = [engine, '-T%s' % format_arg]
-+    cmd = [os.path.join('@graphviz@/bin', engine), '-T%s' % format_arg]
-     rendered = None
-     if filepath is not None:
-         cmd.extend(['-O', filepath])
-@@ -217,7 +217,7 @@ def version():
+     output_format = [f for f in (format_, renderer, formatter) if f is not None]
+-    cmd = [engine, '-T%s' % ':'.join(output_format)]
++    cmd = [os.path.join('@graphviz@/bin', engine), '-T%s' % ':'.join(output_format)]
+ 
+     if filepath is None:
+         rendered = None
+@@ -255,7 +255,7 @@ def version():
          subprocess.CalledProcessError: If the exit status is non-zero.
          RuntimmeError: If the output cannot be parsed into a version number.
      """
 -    cmd = ['dot', '-V']
 +    cmd = ['@graphviz@/bin/dot', '-V']
-     out, _ = run(cmd, check=True, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
- 
-     info = out.decode('ascii')
+     out, _ = run(cmd, check=True, encoding='ascii',
+                  stdout=subprocess.PIPE,
+                  stderr=subprocess.STDOUT)
 diff --git a/tests/test_backend.py b/tests/test_backend.py
-index 7ec12f7..2e8550d 100644
+index 9f307f5..e43bf5b 100644
 --- a/tests/test_backend.py
 +++ b/tests/test_backend.py
-@@ -47,6 +47,7 @@ def test_render_formatter_unknown():
-         render('dot', 'ps', 'nonfilepath', 'ps', '')
+@@ -50,7 +50,7 @@ def test_run_encoding_mocked(mocker, Popen, input=u'sp\xe4m', encoding='utf-8'):
+         m.decode.assert_called_once_with(encoding)
  
  
+-@pytest.exe
 +@pytest.mark.skip(reason='empty $PATH has no effect')
  @pytest.mark.usefixtures('empty_path')
- def test_render_missing_executable():
-     with pytest.raises(ExecutableNotFound, match=r'execute'):
-@@ -85,7 +86,7 @@ def test_render_mocked(capsys, mocker, Popen, quiet):
+ @pytest.mark.parametrize('func, args', [
+     (render, ['dot', 'pdf', 'nonfilepath']),
+@@ -143,7 +143,7 @@ def test_render_mocked(capsys, mocker, Popen, quiet):  # noqa: N803
  
      assert render('dot', 'pdf', 'nonfilepath', quiet=quiet) == 'nonfilepath.pdf'
  
@@ -40,25 +41,17 @@ index 7ec12f7..2e8550d 100644
 +    Popen.assert_called_once_with(['@graphviz@/bin/dot', '-Tpdf', '-O', 'nonfilepath'],
                                    stdout=subprocess.PIPE,
                                    stderr=subprocess.PIPE,
-                                   startupinfo=mocker.ANY)
-@@ -94,6 +95,7 @@ def test_render_mocked(capsys, mocker, Popen, quiet):
-     assert capsys.readouterr() == ('', '' if quiet else 'stderr')
- 
- 
-+@pytest.mark.skip(reason='empty $PATH has no effect')
- @pytest.mark.usefixtures('empty_path')
- def test_pipe_missing_executable():
-     with pytest.raises(ExecutableNotFound, match=r'execute'):
-@@ -143,7 +145,7 @@ def test_pipe_pipe_invalid_data_mocked(mocker, py2, Popen, quiet):  # noqa: N803
-     assert e.value.returncode is mocker.sentinel.returncode
+                                   cwd=None, startupinfo=mocker.ANY)
+@@ -201,7 +201,7 @@ def test_pipe_pipe_invalid_data_mocked(mocker, py2, Popen, quiet):  # noqa: N803
      assert e.value.stdout is mocker.sentinel.out
-     assert e.value.stderr is err
+     e.value.stdout = mocker.sentinel.new_stdout
+     assert e.value.stdout is mocker.sentinel.new_stdout
 -    Popen.assert_called_once_with(['dot', '-Tpng'],
 +    Popen.assert_called_once_with(['@graphviz@/bin/dot', '-Tpng'],
                                    stdin=subprocess.PIPE,
                                    stdout=subprocess.PIPE,
                                    stderr=subprocess.PIPE,
-@@ -166,7 +168,7 @@ def test_pipe_mocked(capsys, mocker, Popen, quiet):  # noqa: N803
+@@ -224,7 +224,7 @@ def test_pipe_mocked(capsys, mocker, Popen, quiet):  # noqa: N803
  
      assert pipe('dot', 'png', b'nongraph', quiet=quiet) is mocker.sentinel.out
  
@@ -67,16 +60,8 @@ index 7ec12f7..2e8550d 100644
                                    stdin=subprocess.PIPE,
                                    stdout=subprocess.PIPE,
                                    stderr=subprocess.PIPE,
-@@ -176,6 +178,7 @@ def test_pipe_mocked(capsys, mocker, Popen, quiet):  # noqa: N803
-     assert capsys.readouterr() == ('', '' if quiet else 'stderr')
- 
- 
-+@pytest.mark.skip(reason='empty $PATH has no effect')
- @pytest.mark.usefixtures('empty_path')
- def test_version_missing_executable():
-     with pytest.raises(ExecutableNotFound, match=r'execute'):
-@@ -196,7 +199,7 @@ def test_version_parsefail_mocked(mocker, Popen):
-     with pytest.raises(RuntimeError):
+@@ -250,7 +250,7 @@ def test_version_parsefail_mocked(mocker, Popen):  # noqa: N803
+     with pytest.raises(RuntimeError, match=r'nonversioninfo'):
          version()
  
 -    Popen.assert_called_once_with(['dot', '-V'],
@@ -84,9 +69,9 @@ index 7ec12f7..2e8550d 100644
                                    stdout=subprocess.PIPE,
                                    stderr=subprocess.STDOUT,
                                    startupinfo=mocker.ANY)
-@@ -211,7 +214,7 @@ def test_version_mocked(mocker, Popen):
+@@ -269,7 +269,7 @@ def test_version_mocked(mocker, Popen, stdout, expected):  # noqa: N803
  
-     assert version() == (1, 2, 3)
+     assert version() == expected
  
 -    Popen.assert_called_once_with(['dot', '-V'],
 +    Popen.assert_called_once_with(['@graphviz@/bin/dot', '-V'],

pkgs/development/python-modules/h5netcdf/default.nix

@@ -35,4 +35,4 @@ buildPythonPackage rec {
     license = lib.licenses.bsd3;
   };
 
-}
+}

pkgs/development/python-modules/helpdev/default.nix

@@ -27,4 +27,4 @@ buildPythonPackage rec {
     license = lib.licenses.mit;
   };
 
-}
+}

pkgs/development/python-modules/idna/default.nix

@@ -17,4 +17,4 @@ buildPythonPackage rec {
     description = "Internationalized Domain Names in Applications (IDNA)";
     license = lib.licenses.bsd3;
   };
-}
+}

pkgs/development/python-modules/imagecorruptions/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
     substituteInPlace setup.py \
       --replace "'opencv-python >= 3.4.5'," ""
   '';
-  
+
   propagatedBuildInputs = [
     numpy
     scikitimage

pkgs/development/python-modules/ipykernel/default.nix

@@ -42,9 +42,9 @@ buildPythonPackage rec {
     "test_subprocess_print"
     "test_subprocess_error"
     "test_ipython_start_kernel_no_userns"
-    
+
     # https://github.com/ipython/ipykernel/issues/506
-    "test_unc_paths"    
+    "test_unc_paths"
   ] ++ lib.optionals (pythonOlder "3.8") [
     # flaky test https://github.com/ipython/ipykernel/issues/485
     "test_shutdown"

pkgs/development/python-modules/jdcal/default.nix

@@ -25,4 +25,4 @@ buildPythonPackage rec {
     license = lib.licenses.bsd2;
     maintainers = with lib.maintainers; [ lihop ];
   };
-}
+}

pkgs/development/python-modules/jupyter-sphinx/default.nix

@@ -27,6 +27,6 @@ buildPythonPackage rec {
     description = "Jupyter Sphinx Extensions";
     homepage = "https://github.com/jupyter/jupyter-sphinx/";
     license = licenses.bsd3;
-  };    
+  };
 
-}
+}

pkgs/development/python-modules/jupyterhub-ldapauthenticator/default.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
 
   # No tests implemented
   doCheck = false;
-   
+
   propagatedBuildInputs = [ jupyterhub ldap3 ];
 
   meta = with lib; {

pkgs/development/python-modules/jwcrypto/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "jwcrypto";
-  version = "0.7";
+  version = "0.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "002i60yidafpr642qcxrd74d8frbc4ci8vfysm05vqydcri1zgmd";
+    sha256 = "b7fee2635bbefdf145399392f5be26ad54161c8271c66b5fe107b4b452f06c24";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/kiwisolver/default.nix

@@ -14,9 +14,9 @@ buildPythonPackage rec {
     inherit pname version;
     sha256 = "247800260cd38160c362d211dcaf4ed0f7816afb5efe56544748b21d6ad6d17f";
   };
-  
+
   NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";
-  
+
   nativeBuildInputs = [
     cppy
   ];

pkgs/development/python-modules/labelbox/default.nix

@@ -20,7 +20,7 @@ buildPythonPackage rec {
   propagatedBuildInputs = [ jinja2 requests pillow rasterio shapely ];
 
   # Test cases are not running on pypi or GitHub
-  doCheck = false;   
+  doCheck = false;
 
   meta = with lib; {
     homepage = "https://github.com/Labelbox/Labelbox";

pkgs/development/python-modules/lazy/default.nix

@@ -18,4 +18,4 @@ buildPythonPackage rec {
     license = lib.licenses.bsd2;
     homepage = "https://github.com/stefanholek/lazy";
   };
-}
+}

pkgs/development/python-modules/librosa/default.nix

@@ -9,6 +9,7 @@
 , audioread
 , resampy
 , soundfile
+, pooch
 }:
 
 buildPythonPackage rec {
@@ -20,15 +21,21 @@ buildPythonPackage rec {
     sha256 = "af0b9f2ed4bbf6aecbc448a4cd27c16453c397cb6bef0f0cfba0e63afea2b839";
   };
 
-  propagatedBuildInputs = [ joblib matplotlib six scikitlearn decorator audioread resampy soundfile ];
+  propagatedBuildInputs = [ joblib matplotlib six scikitlearn decorator audioread resampy soundfile pooch ];
 
   # No tests
+  # 1. Internet connection is required
+  # 2. Got error "module 'librosa' has no attribute 'version'"
   doCheck = false;
 
+  # check that import works, this allows to capture errors like https://github.com/librosa/librosa/issues/1160
+  pythonImportsCheck = [ "librosa" ];
+
   meta = with stdenv.lib; {
     description = "Python module for audio and music processing";
     homepage = "http://librosa.github.io/";
     license = licenses.isc;
+    maintainers = with maintainers; [ GuillaumeDesforges ];
   };
 
 }

pkgs/development/python-modules/logfury/default.nix

@@ -28,4 +28,4 @@ buildPythonPackage rec {
     license = lib.licenses.bsd3;
     maintainers = with lib.maintainers; [ jwiegley ];
   };
-}
+}

pkgs/development/python-modules/loguru/default.nix

@@ -3,7 +3,7 @@
 buildPythonPackage rec {
   pname = "loguru";
   version = "0.5.1";
-  
+
   disabled = isPy27;
   src = fetchPypi {
     inherit pname version;

pkgs/development/python-modules/marionette-harness/default.nix

@@ -21,8 +21,8 @@ buildPythonPackage rec {
     sha256 = "041cd779ae383fb5c56f2bb44824f4e80ba895febd9a3f21570ac274221c82e0";
   };
 
-  propagatedBuildInputs = [ mozprofile mozversion browsermob-proxy moztest 
-    wptserve manifestparser marionette_driver ]; 
+  propagatedBuildInputs = [ mozprofile mozversion browsermob-proxy moztest
+    wptserve manifestparser marionette_driver ];
 
   meta = {
     description = "Mozilla Marionette protocol test automation harness";

pkgs/development/python-modules/marionette-harness/marionette_driver.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
     sha256 = "99ca2513d4e2ca29a08e550346f23947a50627a2b02f6ad36a4550e779fa0ce8";
   };
 
-  propagatedBuildInputs = [ mozversion mozrunner ]; 
+  propagatedBuildInputs = [ mozversion mozrunner ];
 
   meta = {
     description = "Mozilla Marionette driver";

pkgs/development/python-modules/marionette-harness/mozhttpd.nix

@@ -13,7 +13,7 @@ buildPythonPackage rec {
     sha256 = "10y1cr933ajx9ni701ayb7r361pak9wrzr7pdpyx81kkbjddq7qa";
   };
 
-  propagatedBuildInputs = [ moznetwork ]; 
+  propagatedBuildInputs = [ moznetwork ];
 
   meta = {
     description = "Webserver for Mozilla testing";

pkgs/development/python-modules/marionette-harness/moznetwork.nix

@@ -14,7 +14,7 @@ buildPythonPackage rec {
     sha256 = "0ws20l4ggb6mj7ycwrk5h7hj1jmj3mj0ca48k5jzsa4n042ahwrd";
   };
 
-  propagatedBuildInputs = [ mozlog mozinfo ]; 
+  propagatedBuildInputs = [ mozlog mozinfo ];
 
   meta = {
     description = "Network utilities for Mozilla testing";

pkgs/development/python-modules/markdown/3_1.nix

@@ -18,8 +18,8 @@ buildPythonPackage rec {
     sha256 = "2e50876bcdd74517e7b71f3e7a76102050edec255b3983403f1a63e7c8a41e7a";
   };
 
-  propagatedBuildInputs = [ 
-    setuptools 
+  propagatedBuildInputs = [
+    setuptools
   ] ++ lib.optionals (pythonOlder "3.8") [
     importlib-metadata
   ];

pkgs/development/python-modules/markdown/default.nix

@@ -18,8 +18,8 @@ buildPythonPackage rec {
     sha256 = "1fafe3f1ecabfb514a5285fca634a53c1b32a81cb0feb154264d55bf2ff22c17";
   };
 
-  propagatedBuildInputs = [ 
-    setuptools 
+  propagatedBuildInputs = [
+    setuptools
   ] ++ lib.optionals (pythonOlder "3.8") [
     importlib-metadata
   ];

pkgs/development/python-modules/marshmallow-polyfield/default.nix

@@ -31,4 +31,4 @@ buildPythonPackage rec {
     license = licenses.asl20;
     maintainers = with maintainers; [ drewrisinger ];
   };
-}
+}

pkgs/development/python-modules/mask-rcnn/default.nix

@@ -18,7 +18,7 @@
 buildPythonPackage rec {
   pname = "mask-rcnn";
   version = "2.1";
-  
+
   src = fetchFromGitHub {
     owner = "matterport";
     repo = "Mask_RCNN";
@@ -49,4 +49,3 @@ buildPythonPackage rec {
     maintainers = with maintainers; [ rakesh4g ];
   };
 }
-

pkgs/development/python-modules/mock/2.nix

@@ -41,4 +41,4 @@ buildPythonPackage rec {
     license = licenses.bsd2;
   };
 
-}
+}

pkgs/development/python-modules/morphys/default.nix

@@ -21,4 +21,4 @@ buildPythonPackage rec {
     license = licenses.mit;
     maintainers = with maintainers; [ rakesh4g ];
   };
-}
+}

pkgs/development/python-modules/mwoauth/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
 
   # package has no tests
   doCheck = false;
-  
+
   propagatedBuildInputs = [ six pyjwt requests oauthlib requests_oauthlib ];
 
   meta = with lib; {

pkgs/development/python-modules/nassl/default.nix

@@ -80,14 +80,14 @@ buildPythonPackage rec {
     cp ${opensslLegacyStatic.out}/lib/libssl.a \
       ${opensslLegacyStatic.out}/lib/libcrypto.a \
       deps/openssl-OpenSSL_1_0_2e/
-    ln -s ${opensslLegacyStatic.out.dev}/include deps/openssl-OpenSSL_1_0_2e/include 
+    ln -s ${opensslLegacyStatic.out.dev}/include deps/openssl-OpenSSL_1_0_2e/include
     ln -s ${opensslLegacyStatic.bin}/bin deps/openssl-OpenSSL_1_0_2e/apps
 
     mkdir -p deps/openssl-OpenSSL_1_1_1/
     cp ${opensslStatic.out}/lib/libssl.a \
       ${opensslStatic.out}/lib/libcrypto.a \
       deps/openssl-OpenSSL_1_1_1/
-    ln -s ${opensslStatic.out.dev}/include deps/openssl-OpenSSL_1_1_1/include 
+    ln -s ${opensslStatic.out.dev}/include deps/openssl-OpenSSL_1_1_1/include
     ln -s ${opensslStatic.bin}/bin deps/openssl-OpenSSL_1_1_1/apps
 
     mkdir -p deps/zlib-1.2.11/