whonore
f017802bcc
dafny: 4.4.0 -> 4.5.0
2024-03-17 12:30:18 -04:00
Weijia Wang
2e911ea73b
Merge pull request #294471 from r-ryantm/auto-update/deeptools
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deeptools: 3.5.4 -> 3.5.5
2024-03-17 15:20:16 +01:00
OTABI Tomoya
7fc13a0d56
Merge pull request #295598 from r-ryantm/auto-update/mafft
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mafft: 7.520 -> 7.525
2024-03-17 11:56:50 +09:00
Weijia Wang
21a43cab3e
Merge pull request #293632 from r-ryantm/auto-update/getdp
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getdp: 3.5.0 -> 3.6.0
2024-03-17 01:56:17 +01:00
github-actions[bot]
7ca73c43f1
Merge master into haskell-updates
2024-03-16 00:11:51 +00:00
Nick Cao
86e812c02a
Merge pull request #295472 from r-ryantm/auto-update/minimap2
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minimap2: 2.26 -> 2.27
2024-03-15 14:04:43 -04:00
github-actions[bot]
cb97fed572
Merge master into haskell-updates
2024-03-15 00:12:36 +00:00
Nick Cao
4d47ff9ea7
Merge pull request #295463 from NickCao/systemc-cmake
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systemc: build with cmake, expand platforms to unix
2024-03-14 13:45:09 -04:00
Sergey Vinokurov
3a7feda68d
Update Folding@home client to 8.3.7 ( #295745 )
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Depend re2, libevent during build sisnce 8.3.7 appears to link with
them. Depend on git because client wan’t to know what revision it
was built from.
Add zlib and expat to FHS environment because some workunits depend on
them and cause lots of rejections if those libraries are not
available. Unfortunately they don’t appear to be bundled as part
of work distribution.
2024-03-14 12:17:46 +01:00
github-actions[bot]
9f98a38f2e
Merge master into haskell-updates
2024-03-14 00:13:08 +00:00
R. Ryantm
fd5b7188ef
mafft: 7.520 -> 7.525
2024-03-13 12:21:27 +00:00
Doron Behar
39160e127b
Merge pull request #295063 from r-ryantm/auto-update/libqalculate
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{qalculate-{qt,gtk},libqalculate}: 4.9.0 -> 5.0.0,
2024-03-13 07:46:45 +02:00
R. Ryantm
055cf7e2ac
minimap2: 2.26 -> 2.27
2024-03-13 00:30:24 +00:00
github-actions[bot]
9e0e89d13c
Merge master into haskell-updates
2024-03-13 00:12:20 +00:00
Nick Cao
cf7deee349
verilator: add patch for "attempted to destroy locked Thread Pool" failure in tests
2024-03-12 20:00:48 -04:00
Nick Cao
2dc4b18eb6
verilator: fix locating systemc
2024-03-12 20:00:48 -04:00
Nick Cao
d44aa50819
systemc: build with cmake, expand platforms to unix
2024-03-12 20:00:47 -04:00
Pol Dellaiera
03540ae131
Merge pull request #295193 from emilytrau/fritzing-darwin
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fritzing: support darwin
2024-03-12 22:07:30 +01:00
Pol Dellaiera
81074976b7
Merge pull request #295306 from r-ryantm/auto-update/magic-vlsi
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magic-vlsi: 8.3.463 -> 8.3.464
2024-03-12 21:56:19 +01:00
Pol Dellaiera
37b4a69489
Merge pull request #295208 from r-ryantm/auto-update/igv
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igv: 2.17.2 -> 2.17.3
2024-03-12 21:36:29 +01:00
Thiago Kenji Okada
1040e5688c
Merge pull request #294869 from atorres1985-contrib/primecount
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primecount, primesieve: refactor
2024-03-12 19:20:56 +00:00
Nick Cao
6ad9c21bb7
Merge pull request #295171 from r-ryantm/auto-update/seqkit
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seqkit: 2.7.0 -> 2.8.0
2024-03-12 14:40:56 -04:00
Doron Behar
4a414671ac
qalculate-qt: 4.9.0 -> 5.0.0
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Diff: https://github.com/qalculate/qalculate-qt/compare/v4.9.0...v5.0.0
2024-03-12 16:59:25 +02:00
Doron Behar
b668267edd
qalculate-gtk: 4.9.0 -> 5.0.0
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Diff: https://github.com/qalculate/qalculate-gtk/compare/v4.9.0...v5.0.0
2024-03-12 16:59:24 +02:00
R. Ryantm
7d8d32ba15
magic-vlsi: 8.3.463 -> 8.3.464
2024-03-12 12:47:29 +00:00
R. Ryantm
c66736f8e0
eigenmath: unstable-2024-03-06 -> unstable-2024-03-11
2024-03-12 07:13:32 +00:00
Vincent Laporte
0521702b1d
coq_8_19: 8.19.0 → 8.19.1
2024-03-12 05:49:59 +01:00
R. Ryantm
c91acf3624
igv: 2.17.2 -> 2.17.3
2024-03-12 02:48:25 +00:00
Emily Trau
5005010f1d
fritzing: support darwin
2024-03-12 12:30:01 +11:00
R. Ryantm
8cc0f796eb
seqkit: 2.7.0 -> 2.8.0
2024-03-12 00:29:44 +00:00
github-actions[bot]
87dfdf055e
Merge master into haskell-updates
2024-03-12 00:12:17 +00:00
Pol Dellaiera
54c52cb276
Merge pull request #294334 from ShamrockLee/sourceroot-fix
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treewide: fix hard-coded `sourceRoot` prefix for `fetchgit`-based `src`
2024-03-11 16:50:57 +01:00
Anderson Torres
0c68a08dd7
primecount: migrate to by-name
2024-03-11 11:04:30 -03:00
Anderson Torres
0aedcfc0b0
primesieve: migrate to by-name
2024-03-11 11:04:30 -03:00
R. Ryantm
6c08d7994a
calcmysky: 0.3.1 -> 0.3.2
2024-03-11 12:27:56 +00:00
github-actions[bot]
97e35dcd05
Merge master into haskell-updates
2024-03-11 00:12:54 +00:00
R. Ryantm
1e6c427404
primesieve: 12.0 -> 12.1
2024-03-10 13:30:57 +00:00
Joachim Breitner
af10a63043
Revert "elan: revert temporary directory creation"
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This reverts commit 66e4e61595
2024-03-09 16:50:49 +01:00
Joachim Breitner
5681570171
fix: elan: use relative paths in wrapper script
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since 3.1.1, `elan` extracts to a temporary location and then moves to a
final location, this threw the wrapper script off. Updating the patch to
use paths relative to the wrapper script, so that it works independent
of absolute location.
2024-03-09 16:01:03 +01:00
R. Ryantm
a312b41117
deeptools: 3.5.4 -> 3.5.5
2024-03-09 10:06:54 +00:00
github-actions[bot]
54e3ad5442
Merge master into haskell-updates
2024-03-09 00:11:53 +00:00
Yueh-Shun Li
91b3db1309
treewide: fix sourceRoot for fetchgit-based src
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According to Nixpkgs manual[1] and NixOS 23.11 Release Note[2], the
`sourceRoot` attribute passed to `stdenv.mkDerivation` should be
specified as `"${src.name}"` or `"${src.name}/subdir"` when `src` is
produced using `fetchgit`-based fetchers.
`sourceRoot = "source"` or `sourceRoot = "source/subdir"` is based on
the assumption that the `name` attribute of these pre-unpacked fetchers
are always `"source"`, which is not the case. Expecting constant `name`
also makes the source FODs prone to irrelevent hashes during version
bumps.
[1]: https://nixos.org/manual/nixpkgs/unstable/#var-stdenv-sourceRoot
[2]: https://nixos.org/manual/nixos/stable/release-notes#sec-release-23.11
2024-03-09 07:53:25 +08:00
Mauricio Collares
119b065fec
Merge pull request #293065 from r-ryantm/auto-update/jmol
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jmol: 16.1.53 -> 16.1.63
2024-03-08 12:25:12 +01:00
R. Ryantm
8d3ed85daa
jmol: 16.1.53 -> 16.1.63
2024-03-08 09:48:22 +00:00
Weijia Wang
40f9f30edf
Merge pull request #292724 from r-ryantm/auto-update/cvc5
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cvc5: 1.1.1 -> 1.1.2
2024-03-08 08:48:25 +01:00
github-actions[bot]
a32bb438c0
Merge master into haskell-updates
2024-03-08 00:12:53 +00:00
Pol Dellaiera
983f7e7cfb
Merge pull request #293432 from alois31/geogebra-3d
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geogebra: fix 3D view again
2024-03-07 19:53:05 +01:00
Nick Cao
48a8aef2f3
Merge pull request #294100 from r-ryantm/auto-update/eigenmath
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eigenmath: unstable-2024-02-25 -> unstable-2024-03-06
2024-03-07 12:57:05 -05:00
R. Ryantm
f4a362ed25
eigenmath: unstable-2024-02-25 -> unstable-2024-03-06
2024-03-07 17:49:19 +00:00
Robert Hensing
7d2a83e6c2
Merge branch 'master' into HEAD
2024-03-07 18:39:12 +01:00
