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5353 Commits

Author SHA1 Message Date
Ryan Burns
ac9ad0a998
Merge pull request #148240 from hjones2199/adopt-multi 
adopt multiple packages
 2021-12-01 23:34:28 -08:00
Hunter Jones
b952a9b16e adopt multiple packages 2021-12-01 22:04:14 -06:00
Justin Bedo
82aef7957d
fastp: 0.23.1 -> 0.23.2 2021-12-02 08:03:17 +11:00
Vincent Laporte
48406e3fca coq_8_14: 8.14.0 → 8.14.1 
And build Coq ≥ 8.14 with OCaml 4.12
 2021-12-01 13:46:15 +01:00
Jörg Thalheim
e89d789748
Merge pull request #148096 from arkivm/fix-mrtrix 
mrtrix: 3.0.2 -> unstable-2021-11-25
 2021-12-01 10:27:11 +00:00
Doron Behar
43ed12450e
Merge pull request #147828 from doronbehar/pkg/maxima 2021-12-01 11:34:38 +02:00
Vikram Narayanan
b1d95dca56 mrtrix: 3.0.2 -> unstable-2021-11-25 
The latest stable version fails to build with latest eigen (> 3).
https://github.com/MRtrix3/mrtrix3/pull/2368
 2021-11-30 21:03:53 -08:00
Sandro
964a962222
Merge pull request #143545 from r-ryantm/auto-update/betaflight-configurator 2021-11-30 18:13:23 +01:00
Hunter Jones
b04ef6a552 kstars: 3.5.5 -> 3.5.6 2021-11-30 08:13:12 -06:00
Sandro
ebdd276b68
Merge pull request #147499 from trofi/fix-samtools-for-ncurses-6.3 2021-11-29 20:33:45 +01:00
Doron Behar
57ab62314b maxima, sage: Simplify lisp-compiler arguments namings 
Make clearer the difference between `maxima` and `maxima-ecl` top-level
attributes. Use the `lisp-compiler` as a passthru for all of sage's
expressions. Add the `pname` attribute for `ecl` for compatibility with
other lisp implementations.
 2021-11-29 15:51:30 +02:00
Doron Behar
8d17f4babf maxima: 5.45.0 -> 5.45.1 
- Reformat expression with 1 line per input / argument
- Add @doronbehar as maintainer.
 2021-11-29 15:51:29 +02:00
Doron Behar
8d227fe05c wxmaxima: 21.05.2 -> 21.11.0 
- Remove the `Version-` prefix from the version.
- Add @doronbehar as maintainer.
 2021-11-29 14:41:57 +02:00
Markus Kowalewski
5cfe3c4e82
gromacs: fix double precission build on aarch64 2021-11-28 12:43:57 +01:00
Dmitry Kalinkin
b1b02f09ad
Merge pull request #147671 from trofi/fix-root5-for-binutils-2.36 
root5: binutils 2.37 fix
 2021-11-28 04:43:28 -05:00
Bernardo Meurer
51694b0af4 root5: binutils 2.37 fix 
Co-authored-by: TredwellGit <tredwell@tutanota.com>
 2021-11-28 08:49:32 +00:00
Sandro
5d6a70c260
Merge pull request #147202 from voidIess/u/geogebra_6_0_672_0 2021-11-28 03:51:46 +01:00
Markus Kowalewski
8fb36866b8
octopus: 11.2 -> 11.3 2021-11-28 00:04:47 +01:00
Chad Jablonski
7944324d80 programmer-calculator: 2.1 -> 2.2 2021-11-26 23:19:39 -05:00
Sergei Trofimovich
8147fb683c samtools: pull upstream fix for ncurses-6.3 
Without the fix build on ncurses-6.3 fails as:

    bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
       88 |     mvprintw(y,x,str);
          |     ^~~~~~~~
 2021-11-26 13:02:05 +00:00
Ellie Hermaszewska
7282988ce9
Merge pull request #147394 from wirew0rm/bumpPicoscope 
picoscope: 7.0.83 -> 7.0.86 + LANG=C
 2021-11-26 09:33:26 +08:00
Sandro
eff5cece35
Merge pull request #146648 from florentc/tlaplus 2021-11-25 12:38:31 +01:00
Justin Bedo
c1eb0dddea
delly: 0.8.7 -> 0.9.1 2021-11-25 21:19:48 +11:00
Florent C
b5d3526bab tlaplus: 1.7.0 -> 1.7.1 
This updates tlaplus to the most recent stable version and directly
fetches the tlatools jar file from the official Github release page
instead of building from the sources. In the previous tlaplus nix
package, there was an issue with the tools when passing some command
line arguments such as `-workers 4` for TLC. A java string method was
not found and the program would not proceed correctly. This solves this
issue.
 2021-11-25 10:56:11 +01:00
voidless
a34736a38f geogebra6 6-0-644-0 -> 6-0-676-0 2021-11-24 23:15:54 +01:00
Alexander Krimm
e248ab379a picoscope: set LANG=C in wrapper 
The picoscope application seems to crash for non-english locales. This
overrides the LANG environment variable to C. This does not affect the
language selected in the mono gtk GUI.
 2021-11-23 11:26:40 +01:00
Alexander Krimm
d56073935d picoscope: 7.0.83 -> 7.0.86 
Update performed via update.py, other affected versions:
libps*: 2.1.75 -> 2.1.76
libpicoipp: 1.3.0-4r121 -> 1.3.0-4r130
 2021-11-23 11:21:26 +01:00
evils
decac5a0d2
kicad-unstable: 2021-07-12 -> 6.0.0-rc1 (#142261) 
* kicad-unstable: 2021-07-12 -> 2021-11-10

with changes to library paths

Plugin and Content Manager seems to work
  (not related to the library paths changes)

* kicad-unstable: 2021-11-10 -> 6.0.0-rc1
 2021-11-23 00:05:57 -05:00
evils
d2c4e0a3ba
kicad: 5.1.11 -> 5.1.12 (#145403) 
very minor change
5.1.11 was never officially released
  due to a re-tag
 2021-11-23 00:05:27 -05:00
github-actions[bot]
18ad263272
Merge master into staging-next 2021-11-21 18:01:07 +00:00
Artturi
8d6a02b049
Merge pull request #146787 from risicle/ris-hmmer-x86_64 2021-11-21 17:46:47 +02:00
Sandro
07f29d2db2
Merge pull request #146829 from r-burns/isx86 2021-11-21 14:20:12 +01:00
github-actions[bot]
c68c4b3db8
Merge master into staging-next 2021-11-21 12:01:20 +00:00
7c6f434c
b56d7a70a7
Merge pull request #146792 from SuperSandro2000/R 
R: manually fix things after patches got applied
 2021-11-21 08:57:26 +00:00
github-actions[bot]
6ad93ecdbb
Merge master into staging-next 2021-11-21 06:01:18 +00:00
Ryan Burns
2175b157ac treewide: refactor isi686 && isx86_64 -> isx86 2021-11-20 17:50:41 -08:00
Mauricio Collares
1ee4cb8d93
sage: patch test so that new pari warning doesn't cause failures (#4) 2021-11-20 20:13:07 -03:00
Sandro
00a52ef677
R: manually fix things after patches got applied 
This prevents conflicts in case a patch changes the same line
 2021-11-20 21:10:28 +01:00
Robert Scott
ec24bab90e hmmer: restrict platforms to x86_64 
technically big-endian powerpc with VMX is also supported, but
on x86, SSE is apparently *required* which means we can't build
a pure i686 version
 2021-11-20 19:17:57 +00:00
AndersonTorres
dc2cad8150 gp2c: cosmetical changes 2021-11-19 20:35:16 -03:00
AndersonTorres
3845245d71 pari: 2.13.1 -> 2.13.3 2021-11-19 20:35:16 -03:00
Jonathan Ringer
fadaef5aed
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/applications/networking/browsers/chromium/common.nix
 2021-11-19 14:31:57 -08:00
Sandro
ab9aa0dfeb
Merge pull request #146668 from rittelle/remove-rittelle 2021-11-19 21:56:17 +01:00
rittelle
4d8d035c6c
Removed rittelle from the maintainer list 2021-11-19 21:29:09 +01:00
Yurii Matsiuk
29ed2bbe02
fricas: fix build 2021-11-19 21:06:44 +01:00
github-actions[bot]
9d44a614de
Merge master into staging-next 2021-11-19 12:01:09 +00:00
Doron Behar
4d28812ef4 qalculate-gtk: 3.20.1 -> 3.21.0 
Add @doronbehar as maintainer to qalculate-gtk and libqalculate.
 2021-11-19 09:15:32 +02:00
github-actions[bot]
cf671bd5e9
Merge master into staging-next 2021-11-17 12:01:23 +00:00
Sébastien Maret
7a5f0ec2d1 R: fix build on Darwin 
Closes #146131.
 2021-11-17 11:08:50 +01:00
Sébastien Maret
7eea330318
gildas: 20200901_a -> 20211101_a (#146224) 2021-11-17 01:03:57 -05:00
github-actions[bot]
f8cf67790e
Merge master into staging-next 2021-11-17 06:01:28 +00:00
figsoda
6ad04bcb7d
Merge pull request #146243 from figsoda/treewide-rust-feature 
treewide: use buildFeatures and checkFeatures for rust packages
 2021-11-16 21:00:48 -05:00
github-actions[bot]
ca7a3ad2e8
Merge master into staging-next 2021-11-16 18:01:14 +00:00
Sandro
0e4ef9ab2b
Merge pull request #139294 from shnarazk/kissat-init 2021-11-16 18:47:19 +01:00
figsoda
2448ef4630 elan: use buildFeatures 2021-11-16 08:11:49 -05:00
figsoda
cc0e233801 finalfusion-utils: use buildFeature 2021-11-16 08:11:48 -05:00
github-actions[bot]
cfaff97318
Merge staging-next into staging 2021-11-15 18:01:43 +00:00
Gabriel Ebner
f4e3542f5d
Merge pull request #146162 from Kha/elan-wrap-lld 
elan: wrap embedded linker
 2021-11-15 18:07:14 +01:00
Sebastian Ullrich
f8bbc587eb elan: wrap embedded linker 2021-11-15 17:10:04 +01:00
github-actions[bot]
faf5da6aed
Merge staging-next into staging 2021-11-15 12:01:44 +00:00
Mario Rodas
f20b2bb9f5
Merge pull request #143551 from r-ryantm/auto-update/scotch 
scotch: 6.0.4 -> 6.1.1
 2021-11-14 21:16:10 -05:00
Mario Rodas
c8fb7191ad
Merge pull request #143541 from r-ryantm/auto-update/bcftools 
bcftools: 1.13 -> 1.14
 2021-11-14 21:14:30 -05:00
Robert Scott
e4362cea6f monosat, python3Packages.monosat: fix for non-x86 2021-11-14 22:25:09 +00:00
Alyssa Ross
4e1852096f
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 
Conflicts:
	pkgs/development/tools/parsing/flex/2.6.1.nix
 2021-11-14 14:17:46 +00:00
Robert Scott
9149d366b9 boolector: add patch fixing build on aarch64-linux 2021-11-13 19:45:51 -06:00
Robert Scott
3b7766eac2 lingeling: pre1_03b4860d -> pre1_708beb26 2021-11-13 19:45:51 -06:00
Alyssa Ross
26b89bcd16
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 2021-11-13 15:30:01 +00:00
Thomas Watson
1564d88c41 redprl: unstable-2017-03-28 -> unstable-2019-11-04 2021-11-12 19:24:17 -06:00
github-actions[bot]
65356b24bf
Merge staging-next into staging 2021-11-12 18:01:48 +00:00
markuskowa
db93862a2c
Merge pull request #145614 from sheepforce/openmolcas 
openmolcas: 21.06 -> 21.10
 2021-11-12 13:26:38 +01:00
Phillip Seeber
c810f7befc openmolcas: 20.06 -> 20.10 2021-11-12 11:52:30 +01:00
Phillip Seeber
ca7dd700e5 octopus: 10.5 -> 11.2 2021-11-12 11:47:59 +01:00
github-actions[bot]
fd8fae936e
Merge staging-next into staging 2021-11-12 06:02:01 +00:00
Dmitry Kalinkin
a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool 
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
 2021-11-11 23:41:46 -05:00
github-actions[bot]
40a54af057
Merge staging-next into staging 2021-11-12 00:01:59 +00:00
Thiago Kenji Okada
5259293c10
Merge pull request #144899 from Luz/librepcb-0.1.6 
librepcb: 0.1.5 -> 0.1.6
 2021-11-11 15:06:19 -03:00
github-actions[bot]
a4e03b8977
Merge staging-next into staging 2021-11-11 18:01:50 +00:00
Sandro
3260545bc7
Merge pull request #145056 from angustrau/logisim-evolution-3.7.1 2021-11-11 14:01:44 +01:00
Kerstin Humm
bb799694db
epoxy: rename to libepoxy 
https://github.com/NixOS/nixpkgs/issues/145040
 2021-11-11 05:55:32 +01:00
xaverdh
03a257e5a3
treewide: quote urls according to rfc 0045 (#145260) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-11-10 11:37:56 +01:00
markuskowa
9995dbad24
Merge pull request #145251 from markuskowa/upd-gromacs 
gromacs: 2021.3 -> 2021.4
 2021-11-09 22:45:05 +01:00
Jörg Thalheim
584c5fc24d
Merge pull request #145161 from smancill/shogun-fix-build 
shogun: refactor derivation and fix build
 2021-11-09 20:49:19 +00:00
Sandro
9a9ef88b8c
Merge pull request #145178 from SuperSandro2000/applications 
Applications
 2021-11-09 21:33:41 +01:00
Sandro Jäckel
b1c5442ceb
fixup! prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:26:04 +01:00
Sandro Jäckel
15d85dac80
redprl: switch to fetchFromGitHub, use postPatch 2021-11-09 20:10:31 +01:00
Sandro Jäckel
11c55d061e
prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:10:30 +01:00
Markus Kowalewski
430ad642a2
gromacs: 2021.3 -> 2021.4 2021-11-09 20:10:04 +01:00
Vincent Laporte
b42501e1e7 proverif: 2.02pl1 → 2.03 
Do not build `proverif_interact` (that was not installed).
 2021-11-09 17:50:01 +01:00
Angus Trau
14580c7f4d logisim-evolution: 3.5.0 -> 3.7.1 2021-11-09 17:33:19 +11:00
Sebastián Mancilla
203db44ed4 shogun: fix compile errors with Eigen 3.4 
Fixes #142811.
 2021-11-09 00:27:13 -03:00
Sebastián Mancilla
82568e6718 shogun: refactor build 
Main changes are:

- Build with default stdenv instead of forcing GCC 8, by applying upstream
  patches that fix building with newer compilers.

  Together with #134390 and #134393 (and the blas library fixes on #135493
  and #136535), this enables building the derivation on darwin.

- Use multiple outputs.

- Move build-only inputs to nativeBuildInputs.

- Generate the meta examples but do not compile them (they are compiled as
  part of the tests), to not make the build take more time than already is.

  Install the example source files into $doc (but do not install the
  example binaries, only the sources).

- Enable testing by setting the CMake variable CMAKE_SKIP_BUILD_RPATH to
  false (it should not be needed if #108496 is merged). This allows the
  tests to locate the shogun library and run without problems.

  Disable integration and meta tests to speed up the build.

With a few other minor changes:

- Use upstream URL for the json-c patch.

- Be explicit about which optional, commercial dependencies are not used,
  to stop CMake searching for them.

- Do not set NIX_CFLAGS_COMPILE with '-faligned-new' because it causes a
  warning when compiling C files. Set CXXFLAGS instead.

- Remove unnecessary ccache variables from the environment.

- Fix wrong Google Mock download location, which was forcing CMake to need
  network access to download the tarball to the right location (which fails
  within the sandbox).
 2021-11-08 23:57:29 -03:00
Sebastián Mancilla
1e25b1831d shogun: add smancill to maintainers 2021-11-08 23:02:09 -03:00
Sebastián Mancilla
2dd5d704d5 shogun: format derivation 2021-11-08 23:01:59 -03:00
Bruno Bzeznik
4e5a245894 obitools3: removed useless python restriction 2021-11-08 07:51:48 +01:00
Sandro
f2c9cf39e5
Merge pull request #145006 from Artturin/spdlogupd 2021-11-07 23:04:28 +01:00
Artturin
b4fab0a98b treewide: remove fmt from buildInputs where spdlog is used 
spdlog_1 has fmt_8 in propagatedBuildInputs and having fmt which points
to fmt_7 in buildInputs makes the builds use wrong fmt
 2021-11-07 22:05:08 +02:00
Felix Buehler
b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Justin Bedő
7016c7df1c
Merge pull request #144820 from NixOS/r-updates 
R,rPackages: R 4.1.1 -> 4.1.2, rPackages BioC 3.13 -> 3.14
 2021-11-07 08:12:10 +11:00
Matt Christ
065281add0 cemu: mark as broken on darwin 
https://github.com/NixOS/nixpkgs/pull/144889#issuecomment-962469610
 2021-11-06 13:54:44 -07:00
Matt Christ
2771743966 cemu: add link-time-compile-gen, build with gcc9stdenv 2021-11-06 13:54:44 -07:00