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3ff99d8e4c
Commit Graph

6095 Commits

Author SHA1 Message Date
R. Ryantm
3ff99d8e4c dcmtk: 3.6.6 -> 3.6.7 2022-05-25 16:48:38 +00:00
Sandro
3b9985498d
Merge pull request #174036 from trofi/workaround-fno-common-for-paml 
paml: add -fcommon workaround
 2022-05-25 00:35:00 +02:00
Sandro
9fd6278214
Merge pull request #173992 from trofi/workaround-fno-common-for-mni_autoreg 
mni_autoreg: pull upstream workaround for -fno-common toolchains
 2022-05-25 00:26:12 +02:00
Bobby Rong
d1c457d050
Merge pull request #173942 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.2.0 -> 4.2.1
 2022-05-24 21:43:19 +08:00
Sergei Trofimovich
8cba3775d8 paml: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: /build/ccKomtcd.o:(.bss+0x4544): multiple definition of `SeqTypes';
      /build/ccx7EsgU.o:(.bss+0x2a0dfdc): first defined here
 2022-05-22 20:23:12 +01:00
github-actions[bot]
107b6041bc
Merge master into staging-next 2022-05-22 18:01:20 +00:00
ajs124
7d66e93927
Merge pull request #173402 from imsofi/update/geogebra 
geogebra: 5-0-680-0 -> 5-0-706-0
 2022-05-22 16:14:06 +02:00
Sergei Trofimovich
94a5ae4f91 mni_autoreg: pull upstream workaround for -fno-common toolchains 
Without the change build fails on upstream gcc-10 as:

    ld: lib_minctracc.a(minctracclib.c.o):(.bss+0x78): multiple definition of
      `prog_name'; CMakeFiles/xfm2param.dir/Extra_progs/xfm2param.c.o:(.bss+0x18): first defined here
 2022-05-22 14:37:30 +01:00
Sofi
382f65bd30
geogebra: 5-0-680-0 -> 5-0-706-0 2022-05-22 15:04:08 +02:00
github-actions[bot]
deef19c9a1
Merge master into staging-next 2022-05-22 06:01:27 +00:00
Bobby Rong
3b468e68b7
Merge pull request #173017 from trofi/workaround-fno-common-for-freebayes 
freebayes: add -fcommon workaround
 2022-05-22 13:39:14 +08:00
Ben Wolsieffer
fde16aefa7 qgroundcontrol: 4.2.0 -> 4.2.1 2022-05-21 20:51:32 -04:00
github-actions[bot]
dbef850602
Merge master into staging-next 2022-05-22 00:02:20 +00:00
Ben Siraphob
519f0b9e58
zchaff: use clangStdenv 
Fixes build on Linux
 2022-05-21 16:55:37 -07:00
Ben Siraphob
3c31489f15
Merge pull request #173933 from siraben/zchaff-init 
zchaff: init at 2004.5.13
 2022-05-21 16:26:06 -07:00
Ben Siraphob
a6aa08532c
zchaff: init at 2004.5.13 2022-05-21 15:12:08 -07:00
Justin Bedő
48a33d0bbe
Merge pull request #171597 from NixOS/r-updates 
R 4.2.0
 2022-05-22 07:20:19 +10:00
Jan Tojnar
b8b9f52393 Merge branch 'master' into staging-next 
Conflicts:
- pkgs/applications/networking/browsers/firefox/common.nix between 318fae87c0 and f6c5761935.
 2022-05-21 17:52:39 +02:00
7c6f434c
91c498f0f2
Merge pull request #173543 from collares/sage-gdlib 
sageWithDoc: clean up sagedoc.nix
 2022-05-21 04:31:03 +00:00
Mauricio Collares
727e5a1473 sageWithDoc: cleanup sagedoc.nix 2022-05-20 11:03:25 -07:00
github-actions[bot]
77bded3c43
Merge master into staging-next 2022-05-20 18:02:18 +00:00
Sandro
9c03535bdd
Merge pull request #147486 from pmiddend/crystfel-init 
CrystFEL: init at 0.10.1
 2022-05-20 15:01:53 +02:00
github-actions[bot]
bd83e4cf98
Merge master into staging-next 2022-05-19 12:01:54 +00:00
Sandro
ed58443645
Merge pull request #173172 from Artturin/deprecatestringconf 
stdenv: start deprecating non-list configureFlags
 2022-05-19 11:25:24 +02:00
Sergei Trofimovich
68f3647eae
Merge pull request #172998 from trofi/workaround-fno-common-for-eukleides 
eukleides: add -fcommon workaround
 2022-05-19 07:09:54 +00:00
github-actions[bot]
17dfec3606
Merge master into staging-next 2022-05-19 00:02:14 +00:00
Mauricio Collares
21ae98f5f0 sageWithDoc: add sage-with-env to buildInputs 2022-05-18 15:53:02 -07:00
Vincent Laporte
4a87fcbc86
why3: 1.4.1 → 1.5.0 
easycrypt: fix build with why3-1.5.0
frama-c: build with why3 1.4.1
 2022-05-19 00:13:20 +02:00
Vincent Laporte
6e3a86f2f7
why3.withProvers: fix #168644 2022-05-19 00:09:30 +02:00
github-actions[bot]
925219f62b
Merge master into staging-next 2022-05-18 18:01:13 +00:00
Artturin
cf7476804a treewide: convert string configureFlags to list of strings 2022-05-18 20:32:33 +03:00
Gabriel Ebner
cc24423641
Merge pull request #170265 from collares/lean-3.42.1 
lean: 3.42.0 -> 3.43.0
 2022-05-18 17:24:31 +02:00
Mauricio Collares
4b37f16232 lean: 3.42.1 -> 3.43.0 2022-05-18 10:30:32 -04:00
Mauricio Collares
0a449d8fff lean: 3.42.0 -> 3.42.1 2022-05-18 10:27:18 -04:00
Shea Levy
7456be85db
Merge branch 'staging-next' into staging 2022-05-18 06:40:21 -04:00
Someone Serge
b96c7caea6
mxnet: mark cuda build as broken 2022-05-18 09:48:45 +03:00
Robert Scott
39369610f8
Merge pull request #173333 from veprbl/pr/xfitter_fix 
xfitter: fix for gfortran10+
 2022-05-17 23:02:47 +01:00
Fabian Affolter
44b8ec5ccb
Merge pull request #173416 from r-ryantm/auto-update/snakemake 
snakemake: 7.6.2 -> 7.7.0
 2022-05-17 20:39:48 +02:00
Ben Darwin
5cf446f41b ezminc: mark broken 
Package refuses to build with current GCC (11), but building with older
GCC causes error linking libminc and I don't want to pin a bunch of
deps.

A newer version is available upstream but it only works with ITK 5.0
(see https://github.com/BIC-MNI/EZminc/issues/15),
but we have 4.x and 5.2.x in tree and I'm reluctant to add 5.0 just for
one package (even ITK 4.x is only used by ants and ezminc and should be
removed as soon as ants is upgraded).
 2022-05-17 10:24:07 -07:00
R. Ryantm
a52b64015a snakemake: 7.6.2 -> 7.7.0 2022-05-17 16:18:18 +00:00
Justin Bedo
e052be0a84
Merge remote-tracking branch 'origin/master' into r-updates 2022-05-17 20:57:40 +10:00
Dmitry Kalinkin
1c78ce70fa
xfitter: fix for gfortran10+ 2022-05-16 22:07:39 -04:00
Robert Scott
4f7d4241c2
Merge pull request #173279 from veprbl/pr/root5_fix 
root5: fix build with recent gcc
 2022-05-16 22:18:29 +01:00
Dmitry Kalinkin
fdf0806386
root5: fix build with recent gcc 2022-05-16 11:53:42 -04:00
github-actions[bot]
add75748e2
Merge staging-next into staging 2022-05-16 12:03:45 +00:00
7c6f434c
1d4c47ea08
Merge pull request #171511 from collares/sage-9.6 
sage: 9.5 -> 9.6
 2022-05-16 09:51:47 +00:00
github-actions[bot]
e2602ad62e
Merge staging-next into staging 2022-05-16 00:04:11 +00:00
Mauricio Collares
26a87ada65 sage: 9.5 -> 9.6 2022-05-15 19:23:40 -04:00
Dmitry Kalinkin
8e24a6db2e nnpdf: init at 4.0.4 2022-05-15 16:00:00 -07:00
Mauricio Collares
10b16ea5e7 sageWithDoc: make jupyter-sphinx available for docbuild 2022-05-15 12:45:25 -04:00