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6130 Commits

Author SHA1 Message Date
R. RyanTM
7a54d237e0
snakemake: 7.7.0 -> 7.8.0 (#174592) 2022-05-30 10:51:36 -04:00
Janne Heß
bfc5086ae9
Merge pull request #173671 from Mindavi/treewide/broken-zhf 
treewide: start marking packages broken
 2022-05-30 14:10:43 +02:00
Rick van Schijndel
433701147a
treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
Rick van Schijndel
a0dd8198cd
speedcrunch: mark broken on darwin 2022-05-30 13:42:58 +02:00
Sergei Trofimovich
53591dcd4d
Merge pull request #173021 from trofi/fix-fno-common-for-gerbv 
gerbv: pull fix pending upstream inclusion for -fno-common toolchains
 2022-05-29 15:52:56 +00:00
Rick van Schijndel
37c633f7ae treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
Rick van Schijndel
90869787c5 boinc: mark broken for aarch64 2022-05-29 10:56:03 +02:00
Rick van Schijndel
5e1adacaf0 aspino: mark broken for x86_64 Darwin 
Been broken for a few years already too.
 2022-05-29 10:56:02 +02:00
Vincent Laporte
5637570f51 ocamlPackages: rename sedlex_2 into sedlex 2022-05-29 08:48:00 +02:00
Anderson Torres
1b2e9ca249
Merge pull request #175044 from collares/pari-2.13.4 
pari: 2.13.3 -> 2.13.4
 2022-05-28 18:45:26 -03:00
Rick van Schijndel
331e26b6ec
Merge pull request #173867 from trofi/fix-fno-common-for-kssd 
kssd: pull upstream fix for -fno-common tollchains
 2022-05-28 20:39:38 +02:00
Timo Kaufmann
4c45cec9e7
Merge pull request #175041 from collares/nauty-2.7r3 
nauty: 27r1 -> 2.7r3
 2022-05-28 20:05:57 +02:00
Mario Rodas
0f20a255ec
Merge pull request #174677 from r-ryantm/auto-update/gmsh 
gmsh: 4.9.5 -> 4.10.2
 2022-05-28 11:48:04 -05:00
Robert Scott
17b62c338f
Merge pull request #175039 from azahi/clingcon-fix 
clingcon: fix build
 2022-05-28 12:40:54 +01:00
Bobby Rong
4125f6cefb
Merge pull request #174552 from r-ryantm/auto-update/dcmtk 
dcmtk: 3.6.6 -> 3.6.7
 2022-05-28 19:02:58 +08:00
Jörg Thalheim
bcd2d6dc23
Merge pull request #152437 from Mic92/picoscope 
picoscope: fix sources
 2022-05-28 08:39:36 +01:00
Jörg Thalheim
a3a93502f1
picoscope: fix sources 2022-05-28 09:36:31 +02:00
7c6f434c
ae0bca4605
Merge pull request #174438 from r-ryantm/auto-update/clingo 
clingo: 5.5.1 -> 5.5.2
 2022-05-28 07:28:47 +00:00
Mauricio Collares
9e22a36080 pari: 2.13.3 -> 2.13.4 2022-05-27 16:42:28 -07:00
Mauricio Collares
82d40a0695 nauty: 27r1 -> 2.7r3 2022-05-27 16:31:14 -07:00
Azat Bahawi
aa8447dd0c
clingcon: fix build 
Fix build https://hydra.nixos.org/build/178237905
 2022-05-28 02:21:13 +03:00
Artturi
60a0871486
Merge pull request #172391 from Artturin/deprecate-stdenv-glibc 2022-05-27 17:56:19 +03:00
Artturin
c1fffdfffb treewide: change some glibc to stdenv.cc.libc 2022-05-27 05:57:43 +03:00
Timo Kaufmann
d6ed7b20f4
Merge pull request #174139 from collares/sage-kernelspec 
sage: fix passthru.kernelspec regression
 2022-05-26 21:06:26 +02:00
Doron Behar
0d4aa93b26
Merge pull request #174586 from alyaeanyx/qalculate-4.2.0 2022-05-26 09:15:51 +03:00
R. Ryantm
6f241e6555 gmsh: 4.9.5 -> 4.10.2 2022-05-26 05:47:28 +00:00
Sandro
b9c9593a88
Merge pull request #173304 from IvarWithoutBones/bump/dotnetmodule 2022-05-26 00:26:18 +02:00
Mauricio Collares
8711501e96 sage: fix passthru.kernelspec regression 2022-05-25 14:54:52 -07:00
alyaeanyx
7275bd17fd
libqalculate, qalculate-gtk: 4.1.1 -> 4.2.0 2022-05-25 21:05:36 +02:00
Cyril Cohen
d113661156 coqPackages: etc 
- put `findlib` in `buildInputs` of `mkCoqDerivation` to make sure `coq` packages find their ocaml plugin dependencies,
- use `propagatedBuildInputs` to make sure ocaml plugin dependencies are in path,
- updated `coqPackage.heq` (broken url),
- fixed use of `DESTDIR` and `COQMF_COQLIB` in mkCoqDerivation,
- adding `COQCORELIB` environement variable to put ocaml plugin files in the right place,
- make `metaFetch` available from `coqPackages`
 2022-05-25 20:00:25 +02:00
R. Ryantm
3ff99d8e4c dcmtk: 3.6.6 -> 3.6.7 2022-05-25 16:48:38 +00:00
Artturin
0c4d65b21e treewide: stdenv.glibc -> glibc 2022-05-25 15:51:20 +03:00
R. Ryantm
c1ab8c327a clingo: 5.5.1 -> 5.5.2 2022-05-25 07:48:30 +00:00
Sandro
3b9985498d
Merge pull request #174036 from trofi/workaround-fno-common-for-paml 
paml: add -fcommon workaround
 2022-05-25 00:35:00 +02:00
Sandro
9fd6278214
Merge pull request #173992 from trofi/workaround-fno-common-for-mni_autoreg 
mni_autoreg: pull upstream workaround for -fno-common toolchains
 2022-05-25 00:26:12 +02:00
Bobby Rong
d1c457d050
Merge pull request #173942 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.2.0 -> 4.2.1
 2022-05-24 21:43:19 +08:00
Sergei Trofimovich
8cba3775d8 paml: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: /build/ccKomtcd.o:(.bss+0x4544): multiple definition of `SeqTypes';
      /build/ccx7EsgU.o:(.bss+0x2a0dfdc): first defined here
 2022-05-22 20:23:12 +01:00
github-actions[bot]
107b6041bc
Merge master into staging-next 2022-05-22 18:01:20 +00:00
ajs124
7d66e93927
Merge pull request #173402 from imsofi/update/geogebra 
geogebra: 5-0-680-0 -> 5-0-706-0
 2022-05-22 16:14:06 +02:00
Sergei Trofimovich
94a5ae4f91 mni_autoreg: pull upstream workaround for -fno-common toolchains 
Without the change build fails on upstream gcc-10 as:

    ld: lib_minctracc.a(minctracclib.c.o):(.bss+0x78): multiple definition of
      `prog_name'; CMakeFiles/xfm2param.dir/Extra_progs/xfm2param.c.o:(.bss+0x18): first defined here
 2022-05-22 14:37:30 +01:00
Sofi
382f65bd30
geogebra: 5-0-680-0 -> 5-0-706-0 2022-05-22 15:04:08 +02:00
github-actions[bot]
deef19c9a1
Merge master into staging-next 2022-05-22 06:01:27 +00:00
Bobby Rong
3b468e68b7
Merge pull request #173017 from trofi/workaround-fno-common-for-freebayes 
freebayes: add -fcommon workaround
 2022-05-22 13:39:14 +08:00
Ben Wolsieffer
fde16aefa7 qgroundcontrol: 4.2.0 -> 4.2.1 2022-05-21 20:51:32 -04:00
github-actions[bot]
dbef850602
Merge master into staging-next 2022-05-22 00:02:20 +00:00
Ben Siraphob
519f0b9e58
zchaff: use clangStdenv 
Fixes build on Linux
 2022-05-21 16:55:37 -07:00
Ben Siraphob
3c31489f15
Merge pull request #173933 from siraben/zchaff-init 
zchaff: init at 2004.5.13
 2022-05-21 16:26:06 -07:00
Ben Siraphob
a6aa08532c
zchaff: init at 2004.5.13 2022-05-21 15:12:08 -07:00
Justin Bedő
48a33d0bbe
Merge pull request #171597 from NixOS/r-updates 
R 4.2.0
 2022-05-22 07:20:19 +10:00
Jan Tojnar
b8b9f52393 Merge branch 'master' into staging-next 
Conflicts:
- pkgs/applications/networking/browsers/firefox/common.nix between 318fae87c0 and f6c5761935.
 2022-05-21 17:52:39 +02:00