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40 Commits

Author SHA1 Message Date
R. Ryantm
c91acf3624 igv: 2.17.2 -> 2.17.3 2024-03-12 02:48:25 +00:00
R. Ryantm
5ca14e22c6 igv: 2.17.1 -> 2.17.2 2024-02-10 06:01:14 +00:00
Rolf Schröder
f835df35c7
igv: use jdk17 instead of jdk11 (#285521) 2024-02-01 14:42:34 +01:00
R. Ryantm
bae468a718 igv: 2.17.0 -> 2.17.1 2024-01-24 08:42:17 +00:00
R. Ryantm
b3249dde09 igv: 2.16.2 -> 2.17.0 2024-01-08 05:30:06 +00:00
Stian Lågstad
54f913f862 igv: Fix missing wrapGAppsHook causing causing GLib-GIO-ERROR 
Fixes https://github.com/NixOS/nixpkgs/issues/270226
 2023-11-26 19:57:18 +01:00
R. Ryantm
ac77a8f7d0 igv: 2.16.1 -> 2.16.2 2023-09-09 05:56:58 +00:00
R. Ryantm
7c4e31bb4c igv: 2.16.0 -> 2.16.1 2023-05-31 13:33:15 +00:00
R. Ryantm
eadaccaa42 igv: 2.15.5 -> 2.16.0 2023-02-04 18:01:58 +00:00
R. Ryantm
422b1c5144 igv: 2.15.4 -> 2.15.5 2023-01-25 17:03:16 +00:00
R. Ryantm
605d013aac igv: 2.15.1 -> 2.15.4 2023-01-03 14:36:54 +08:00
R. Ryantm
6ba0d20487 igv: 2.14.1 -> 2.15.1 2022-11-20 14:06:29 +08:00
R. Ryantm
c7832514ef igv: 2.14.0 -> 2.14.1 2022-09-05 22:29:15 +00:00
R. Ryantm
f4c3ff2d7f igv: 2.13.2 -> 2.14.0 2022-08-16 13:24:02 +00:00
kilianar
0442ab82e0 igv: 2.8.13 -> 2.13.2 
- https://software.broadinstitute.org/software/igv/2.9.x
- https://software.broadinstitute.org/software/igv/2.10.x
- https://software.broadinstitute.org/software/igv/2.11.x
- https://software.broadinstitute.org/software/igv/2.12.x
- https://software.broadinstitute.org/software/igv/2.13.x
 2022-08-07 17:53:06 +02:00
Profpatsch
4a7f99d55d treewide: with stdenv.lib; in meta -> with lib; 
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
 2021-01-11 10:38:22 +01:00
R. RyanTM
212ba486d6 igv: 2.8.12 -> 2.8.13 2020-11-28 02:18:00 +00:00
R. RyanTM
82d1113013 igv: 2.8.11 -> 2.8.12 2020-11-13 18:25:51 +00:00
R. RyanTM
8ef46be2a4 igv: 2.8.9 -> 2.8.11 2020-11-02 10:16:32 +00:00
Silvan Mosberger
cf47ba66fb
Merge pull request #81129 from scalavision/igv-update-28x 
igv: 2.4.19 -> 2.8.0
 2020-08-23 19:24:33 +02:00
scalavision
78e89143d4
igv: 2.4.19 -> 2.8.9 
Co-Authored-By: Silvan Mosberger <contact@infinisil.com>
 2020-08-23 19:23:04 +02:00
Michael Reilly
84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
Miguel Madrid Mencía
148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
volth
46420bbaa3 treewide: name -> pname (easy cases) (#66585) 
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
 2019-08-15 13:41:18 +01:00
R. RyanTM
9989b7c8c4 igv: 2.4.17 -> 2.4.19 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
 2019-03-03 20:48:52 +01:00
R. RyanTM
da628f0cbd igv: 2.4.16 -> 2.4.17 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
 2019-02-05 20:06:55 -08:00
R. RyanTM
338cf1a7fc igv: 2.4.15 -> 2.4.16 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
 2018-12-26 10:44:01 +01:00
R. RyanTM
37f01d5bf8 igv: 2.4.14 -> 2.4.15 (#50087) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
 2018-11-09 22:42:04 -05:00
R. RyanTM
33ebfbfcf8 igv: 2.4.13 -> 2.4.14 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions.
 2018-08-17 01:23:03 -07:00
R. RyanTM
ab535c2757 igv: 2.4.11 -> 2.4.13 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.
 2018-07-13 02:49:22 -07:00
R. RyanTM
6ec4be7ec5 igv: 2.4.10 -> 2.4.11 (#43003) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/bin/igv had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.4.11 with grep in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11
- directory tree listing: https://gist.github.com/ca4cf484aab1c1590806c47c4fdde1d7
- du listing: https://gist.github.com/f7ff80a2429cf0a942195db4944659b1
 2018-07-09 16:02:34 +02:00
Silvan Mosberger
57bccb3cb8 treewide: http -> https sources (#42676) 
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
 2018-06-28 20:43:35 +02:00
R. RyanTM
34257096e6 igv: 2.4.9 -> 2.4.10 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.4.10 with grep in /nix/store/171fy8d969ynn0m74xi7dxvrbv9di37z-igv-2.4.10
- directory tree listing: https://gist.github.com/9164cca651385e7845f2ac52628d5ad7
 2018-03-31 08:54:46 -07:00
Ryan Mulligan
9b4c82d366 igv: 2.4.8 -> 2.4.9 
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.4.9 with grep in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
- found 2.4.9 in filename of file in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
 2018-03-14 12:04:23 -07:00
Ryan Mulligan
d1dc4cae54 igv: 2.4.6 -> 2.4.8 
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.4.8 with grep in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
- found 2.4.8 in filename of file in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8

cc "@mimadrid"
 2018-02-26 19:11:52 -08:00
Arcadio Rubio García
550e6146d4 igv: 2.3.98 -> 2.4.6 2018-01-21 21:07:44 +00:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809) 
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
 2017-08-01 22:03:30 +02:00
mimadrid
20fb18bdbc
igv: 2.3.89 -> 2.3.98 2017-08-01 20:46:31 +02:00
mimadrid
29cb10c021
igv: 2.3.77 -> 2.3.89 2016-12-23 19:37:10 -05:00
mimadrid
5c7a75412e
igv: init at 2.3.77 2016-06-26 19:27:56 +02:00