Alexis Praga
75fc8ae0f4
perlPackages.BioBigFile: Addressing reviewer change
2023-11-21 23:16:39 +01:00
Alexis Praga
cc4bd30387
perlPackages.BioBigfile: init at 1.07
...
Perl interface to manipulate BigWig and BigBeg files (for genomics)
This will be used to package VEP : uttps://www.ensembl.org/info/docs/tools/vep/script/vep_download.html
For that, only kent version 335 works at the moment.
For this commit, 2 commits for kent are needed
- e027a5d8362b2c6f4c28
2023-11-21 23:16:12 +01:00
Alexis Praga
2b2c6f4c28
kent: enable patches if needed.
...
This is required by BioBigFile, which needs an older Kent version.
2023-11-12 21:46:39 +01:00
Alexis Praga
e027a5d836
kent: package headers too.
...
This is needed for perlPackages.BioBigFile.
Removing NIX_BUILD_TOP.
2023-05-06 19:48:14 +02:00
natsukium
23205d28d2
kent: add missing information to the meta
2023-04-20 16:06:09 +09:00
natsukium
5b62152599
kent: add runHooks
2023-04-20 16:06:08 +09:00
natsukium
1e68ff3ee9
kent: 404 -> 446
...
https://github.com/ucscGenomeBrowser/kent/compare/v404_base...v446_base
2023-04-20 16:05:44 +09:00
Sandro Jäckel
3453b89f4b
lzma: deprecate alias
2021-04-04 19:49:52 +02:00
Profpatsch
4a7f99d55d
treewide: with stdenv.lib; in meta -> with lib;
...
Part of: https://github.com/NixOS/nixpkgs/issues/108938
meta = with stdenv.lib;
is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.
This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.
The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00
Scalavision
a6f124f57b
kent: init at 404
2020-10-01 19:50:37 +02:00
