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9343 Commits

Author SHA1 Message Date
Sébastien Maret
ef401a3702
gildas: 20230801_a -> 20240401_a; fix build on darwin (#304813) 
- Use GNU's cpp instead of Apple's (see #304528)

- Use clang and clang++ on darwin-aarch64

- Update from 20230801_a -> 20240401_a

Closes #304516
 2024-04-27 19:56:58 +08:00
Janik
74cc329a36
Merge pull request #306702 from marsam/goodbye 
maintainers: remove marsam
 2024-04-25 13:51:10 +02:00
Matthias Beyer
2da6875b98
Merge pull request #304273 from r-ryantm/auto-update/gplates 
gplates: 2.4 -> 2.5
 2024-04-25 10:48:11 +02:00
Yt
f2157c2a34
Merge pull request #305974 from onny/rocksdb-update 
rocksdb: 8.3.2 -> 9.1.0, rocksdb_8_3: init at 8.3.2
 2024-04-25 01:38:37 +00:00
Atemu
2432c6b829
Merge pull request #271071 from pbsds/wrapAppImage-pname-redux 
appimageTools.wrapAppImage: remove version from `pname`
 2024-04-24 21:48:19 +02:00
Peder Bergebakken Sundt
985aa8174d treewide: unbreak appimageTools.wrapType2 builds 
`appimageTools.wrapType2` no longer creates a binary `$out/bin/${name}` if `pname` and `version` is provided.
Derivations that have worked around this behavior with a `mv $out/bin/{${name},${pname}}` broke as a result.
This should fix most instances.

contex: #271071
 2024-04-24 15:26:52 +02:00
Mario Rodas
2becf6e837 maintainers: drop marsam 2024-04-24 04:20:00 +00:00
Tom Hubrecht
c4168ca616 sage: Fix test failure from scipy upgrade 2024-04-23 16:45:14 +02:00
R. Ryantm
03cef041d7 eigenmath: unstable-2024-04-08 -> unstable-2024-04-19 2024-04-23 05:26:42 +00:00
Peder Bergebakken Sundt
52359fe80a
Merge pull request #297196 from TomaSajt/brmodelo 
brmodelo: make deterministic and clean up
 2024-04-22 23:34:10 +02:00
R. Ryantm
ed91464081 python311Packages.snakemake: 8.10.6 -> 8.10.7 2024-04-22 16:11:46 -04:00
Jonas Heinrich
f7709cf1b3 treewide: switch from rocksdb -> rocksdb_8_3 2024-04-22 13:02:14 +02:00
Nikolay Korotkiy
76d43a0848
Merge pull request #305483 from wegank/nest-hash 
nest: fix hash
 2024-04-20 14:51:35 +04:00
Weijia Wang
5bc788216a nest: fix hash 2024-04-20 10:17:24 +02:00
Mario Rodas
ebdd21f207
Merge pull request #299214 from kilianar/stellarium-24.1 
stellarium: 23.4 -> 24.1
 2024-04-19 22:05:15 -05:00
Vladimír Čunát
8c0c955a09
Merge branch 'master' into staging-next 2024-04-19 07:52:28 +02:00
Weijia Wang
2e5299f478
Merge pull request #303357 from r-ryantm/auto-update/iqtree 
iqtree: 2.3.1 -> 2.3.2
 2024-04-18 20:54:50 +02:00
github-actions[bot]
5c2b2d5b74
Merge master into staging-next 2024-04-17 18:01:04 +00:00
Aleksana
e1e418e67a
Merge pull request #304395 from r-ryantm/auto-update/bcftools 
bcftools: 1.19 -> 1.20
 2024-04-17 21:16:25 +08:00
github-actions[bot]
a459b363de
Merge master into staging-next 2024-04-16 12:01:11 +00:00
Weijia Wang
72e43a6c65
Merge pull request #303754 from r-ryantm/auto-update/messer-slim 
messer-slim: 4.2 -> 4.2.1
 2024-04-16 12:51:51 +02:00
github-actions[bot]
a34a6c51cd
Merge master into staging-next 2024-04-16 06:01:08 +00:00
R. Ryantm
1063186a66 cwltool: 3.1.20240112164112 -> 3.1.20240404144621 2024-04-15 22:31:58 -04:00
R. Ryantm
c48e90fd63 bcftools: 1.19 -> 1.20 2024-04-16 00:22:42 +00:00
github-actions[bot]
097ced11fa
Merge master into staging-next 2024-04-16 00:02:03 +00:00
Mario Rodas
706d06f722
Merge pull request #303624 from r-ryantm/auto-update/python311Packages.nest 
python311Packages.nest: 3.6 -> 3.7

Closes https://github.com/NixOS/nixpkgs/pull/303637
 2024-04-15 18:57:28 -05:00
R. Ryantm
2ff5b02ffe gplates: 2.4 -> 2.5 2024-04-15 13:09:35 +00:00
github-actions[bot]
b7dcef0598
Merge master into staging-next 2024-04-14 20:49:29 +00:00
Someone
446fee38c1
Merge pull request #301188 from SomeoneSerge/cudaPackages/rename-cudatoolkit 
cudaPackages.cudatoolkit: replace with symlinkJoin
 2024-04-14 18:15:20 +00:00
Nick Cao
470d6d7c07
Merge pull request #303920 from TomaSajt/simulide_ 
simulide_1_1_0: 1.1.0-RC1 -> 1.1.0-SR0
 2024-04-14 10:48:20 -04:00
TomaSajt
db585038d2
simulide_1_1_0: 1.1.0-RC1 -> 1.1.0-SR0 2024-04-14 09:21:21 +02:00
Someone Serge
2c51064b0b treewide: remove cudatoolkit.cc references 2024-04-13 14:24:39 +00:00
R. Ryantm
25a9517a84 messer-slim: 4.2 -> 4.2.1 2024-04-13 01:13:01 +00:00
github-actions[bot]
5a301eda67
Merge master into staging-next 2024-04-13 00:02:05 +00:00
Samuel Ainsworth
2989f99f0f
Merge pull request #303236 from GaetanLepage/mujoco 
mujoco: 3.1.3 -> 3.1.4
 2024-04-12 16:59:28 -04:00
R. Ryantm
15b7dddaba python311Packages.nest: 3.6 -> 3.7 2024-04-12 13:50:38 +00:00
github-actions[bot]
35713de428
Merge master into staging-next 2024-04-12 12:01:18 +00:00
Weijia Wang
3e0325206d
Merge pull request #301677 from r-ryantm/auto-update/minimap2 
minimap2: 2.27 -> 2.28
 2024-04-12 10:20:56 +02:00
Vladimír Čunát
24d4f2cd52
Merge branch 'staging' into staging-next 
Conflicts (tried to quickly resolve somehow, checked eval):
	pkgs/development/python-modules/apsw/default.nix
	pkgs/development/python-modules/mido/default.nix
	pkgs/development/python-modules/pytest-bdd/default.nix
	pkgs/development/python-modules/sparse/default.nix
 2024-04-12 07:06:54 +02:00
Nick Cao
1ae21148cd
Merge pull request #303385 from r-ryantm/auto-update/eigenmath 
eigenmath: unstable-2024-03-20 -> unstable-2024-04-08
 2024-04-11 13:06:55 -04:00
R. Ryantm
5010a92fa9 eigenmath: unstable-2024-03-20 -> unstable-2024-04-08 2024-04-11 15:23:39 +00:00
R. Ryantm
636999c359 iqtree: 2.3.1 -> 2.3.2 2024-04-11 13:08:33 +00:00
Weijia Wang
7d31098bc9
Merge pull request #300785 from r-ryantm/auto-update/boinc 
boinc: 7.24.3 -> 8.0.1
 2024-04-11 05:11:04 +02:00
Gaetan Lepage
090f1039ac mujoco: 3.1.3 -> 3.1.4 
Diff: https://github.com/google-deepmind/mujoco/compare/refs/tags/3.1.3...3.1.4

Changelog: https://github.com/google-deepmind/mujoco/releases/tag/3.1.4
 2024-04-11 00:42:45 +02:00
Pascal Wittmann
2da1af77d4
Merge pull request #302984 from numinit/klee-update 
klee: 3.0 -> 3.1
 2024-04-10 19:52:37 +02:00
Rick van Schijndel
067e519281
Merge pull request #302858 from tweag/infinisil-maintainer 
treewide: Drop infinisil as maintainer from most packages
 2024-04-10 08:50:38 +02:00
R. Ryantm
ef1c3ced3f snakemake: 8.10.4 -> 8.10.6 2024-04-10 02:29:57 -04:00
Morgan Jones
80d57056bc
klee: 3.0 -> 3.1 2024-04-09 19:41:50 -07:00
Silvan Mosberger
ea5dfeab93 treewide: Drop infinisil as maintainer from most packages 
I'm not going anywhere, I'm focusing my energy on other issues, and
getting pinged as a maintainer for packages is a bit distracting (also
I'm not using most of these packages anyways!)
 2024-04-09 21:43:39 +02:00
Weijia Wang
3f59355d84 Merge branch 'staging-next' into staging 2024-04-09 08:26:23 +02:00