ff1a94e523
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
32 lines
860 B
Nix
32 lines
860 B
Nix
{ lib, stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "kallisto";
|
|
version = "0.50.1";
|
|
|
|
src = fetchFromGitHub {
|
|
repo = "kallisto";
|
|
owner = "pachterlab";
|
|
rev = "v${version}";
|
|
sha256 = "sha256-JJZJOl4u6FzngrrMuC2AfD5ry2LBOT8tdz2piH+9LFE=";
|
|
};
|
|
|
|
nativeBuildInputs = [ autoconf cmake ];
|
|
|
|
buildInputs = [ hdf5 zlib ];
|
|
|
|
cmakeFlags = [ "-DUSE_HDF5=ON" ];
|
|
|
|
# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
|
|
enableParallelBuilding = false;
|
|
|
|
meta = with lib; {
|
|
description = "Program for quantifying abundances of transcripts from RNA-Seq data";
|
|
mainProgram = "kallisto";
|
|
homepage = "https://pachterlab.github.io/kallisto";
|
|
license = licenses.bsd2;
|
|
platforms = platforms.linux;
|
|
maintainers = with maintainers; [ arcadio ];
|
|
};
|
|
}
|