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angsd
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angsd: pull patch pending upstream inclusion for parallel build fix
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2023-08-20 08:50:53 +01:00 |
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ants
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ants: update postInstall attribute
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2023-09-02 23:09:28 +02:00 |
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aragorn
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aragorn: fix format
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2023-06-08 18:42:29 +09:00 |
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astral
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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bamtools
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bamtools: init at 2.5.2
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2023-08-18 00:17:15 +09:00 |
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bayescan
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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bcftools
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bcftools: 1.17 -> 1.18
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2023-08-01 03:38:31 +00:00 |
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bedops
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bedops: fix build on darwin
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2023-04-24 22:11:47 +09:00 |
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bedtools
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bedtools: 2.30.0 -> 2.31.0
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2023-04-29 03:05:55 +00:00 |
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bftools
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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blast
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blast: 2.14.0 -> 2.14.1
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2023-09-16 03:10:11 +00:00 |
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bowtie
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treewide:replace http by https when https is a permanent redirection
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2023-02-19 21:47:59 +01:00 |
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bowtie2
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bowtie2: 2.4.5 -> 2.5.1
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2023-01-21 21:19:00 +00:00 |
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bppsuite
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bppsuite: fix homepage
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2023-06-15 12:18:11 -04:00 |
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bwa
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bwa: add runHook
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2023-05-15 16:13:49 +09:00 |
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bwa-mem2
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bwa-mem2: init at version 2.2.1
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2023-08-23 15:02:06 -07:00 |
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cd-hit
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clustal-omega
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treewide: add meta.mainProgram to many packages
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2022-04-14 10:24:01 -07:00 |
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cmtk
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cmtk: fix format
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2023-07-11 17:50:47 +09:00 |
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conglomerate
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dcm2niix
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treewide: Rename libyamlcpp* to yaml-cpp*
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2023-01-31 16:22:54 +01:00 |
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deeptools
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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delly
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delly: enable openmp
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2023-07-14 00:20:20 +09:00 |
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diamond
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diamond: 2.1.7 -> 2.1.8
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2023-06-25 04:35:30 +00:00 |
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dssp
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dssp: 4.4.2 -> 4.4.3
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2023-09-28 15:38:55 +09:00 |
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ecopcr
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ecopcr: 0.8.0 -> 1.0.1
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2022-12-08 04:35:53 +01:00 |
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eggnog-mapper
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eggnog-mapper: 2.1.9 -> 2.1.10
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2023-02-11 08:43:59 +00:00 |
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emboss
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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est-sfs
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exonerate
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EZminc
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EZminc: itk4 -> itk (formally; package is broken)
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2022-09-04 13:36:24 -04:00 |
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fastp
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fastp: 0.23.3 -> 0.23.4
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2023-06-04 03:21:21 +00:00 |
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febio-studio
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treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4
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2023-03-13 16:42:22 -06:00 |
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flywheel-cli
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treewide/applications: add sourceType binaryNativeCode for many packages
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2022-06-23 18:38:19 +01:00 |
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freebayes
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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gatk
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gatk: 4.3.0.0 -> 4.4.0.0
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2023-03-18 01:10:14 +00:00 |
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genmap
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treewide: switch to nativeCheckInputs
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2023-01-21 12:00:00 +00:00 |
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hh-suite
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hh-suite: init at 3.3.0
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2023-04-19 10:32:35 +09:00 |
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hisat2
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hisat2: update homepage
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2022-02-06 15:10:53 +01:00 |
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hmmer
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hmmer: add changelog to meta
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2023-09-24 04:24:00 +00:00 |
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igv
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igv: 2.16.1 -> 2.16.2
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2023-09-09 05:56:58 +00:00 |
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inormalize
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inormalize/minc-widgets/gimp-plugins: use pname & version
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2023-02-12 22:21:44 +01:00 |
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iqtree
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iqtree: 2.2.2.6 -> 2.2.2.7
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2023-08-25 12:25:13 +00:00 |
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itsx
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iv
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jbrowse
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jbrowse: init at 2.5.0
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2023-05-12 11:24:26 -07:00 |
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kalign
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kalign: init at 3.3.5
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2023-06-14 21:05:58 +09:00 |
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kallisto
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kallisto: 0.48.0 -> 0.50.0
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2023-07-09 17:19:43 +00:00 |
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kent
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kent: package headers too.
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2023-05-06 19:48:14 +02:00 |
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kssd
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kssd: pull upstream fix for -fno-common tollchains
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2022-05-21 11:22:53 +01:00 |
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last
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last: 1460 -> 1471
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2023-08-18 14:11:53 +10:00 |
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macs2
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macs2: 2.2.8 -> 2.2.9.1
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2023-08-11 14:45:45 -07:00 |
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macse
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treewide: set sourceProvenance for packages containing downloaded jars
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2022-06-04 19:47:57 +01:00 |
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mafft
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mafft: 7.515 -> 7.520
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2023-04-12 13:28:24 +09:00 |
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manta
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megahit
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treewide: optional -> optionals where the argument is a list
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2022-10-10 15:40:21 +03:00 |
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meme-suite
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pkgs.applications: remove unused args
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2022-10-12 16:00:16 +02:00 |
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messer-slim
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messer-slim: 4.0 -> 4.0.1
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2022-09-15 22:25:51 +00:00 |
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migrate
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
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minc-tools
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minc-widgets
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inormalize/minc-widgets/gimp-plugins: use pname & version
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2023-02-12 22:21:44 +01:00 |
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minia
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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minimap2
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minimap2: 2.25 -> 2.26
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2023-05-03 19:38:48 +00:00 |
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mmseqs2
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mmseqs2: init at 14-7e284
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2022-10-31 23:49:10 +09:00 |
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mni_autoreg
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mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20
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2022-07-26 16:03:12 -04:00 |
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mosdepth
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mosdepth: 0.3.4 -> 0.3.5
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2023-09-19 00:55:31 +00:00 |
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mrbayes
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mrtrix
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mrtrix: unstable-2021-11-25 -> 3.0.4
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2023-09-06 12:11:38 -04:00 |
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muscle
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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N3
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nest
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nest-mpi: 3.4 -> 3.5
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2023-07-08 16:03:30 +00:00 |
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neuron
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treewide: fix lints
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2023-03-11 00:55:17 +02:00 |
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niftyreg
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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niftyseg
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obitools
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octopus
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various packages: pin boost179
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2023-07-22 16:54:22 +02:00 |
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paml
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paml: refactor
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2023-07-14 15:08:14 +09:00 |
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picard-tools
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picard-tools: 3.0.0 -> 3.1.0
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2023-08-02 22:03:03 +00:00 |
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platypus
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plink-ng
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treewide: use optionalString
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2023-02-13 21:52:34 +01:00 |
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poretools
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prodigal
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quast
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treewide: python{ => .pythonForBuild}.interpreter
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2023-02-26 20:26:17 +00:00 |
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raxml
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raxml-mpi: remove appendToName to have a consistent package name for repology
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2022-02-28 12:46:15 +01:00 |
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repseek
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repseek: init at 9Sep2014 (#148017)
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2022-01-31 14:59:32 +01:00 |
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sambamba
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sambamba: 1.0.0 -> 1.0.1
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2023-08-25 06:20:00 +00:00 |
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samblaster
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samtools
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samtools: 1.17 -> 1.18
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2023-08-07 01:22:06 +00:00 |
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seaview
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treewide:replace http by https when https is a permanent redirection
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2023-02-19 21:47:59 +01:00 |
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seqkit
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seqkit: 2.5.0 -> 2.5.1
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2023-08-10 04:42:38 +00:00 |
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seqtk
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seqtk: 1.3 -> 1.4
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2023-05-28 06:48:51 +00:00 |
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snpeff
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treewide: replace http by https when https is a permanent redirection
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2023-01-22 02:46:49 +01:00 |
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somatic-sniper
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sortmerna
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treewide: replace -DCMAKE_BUILD_TYPE in cmakeFlags with cmakeBuildType
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2023-09-08 14:18:26 +00:00 |
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spades
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Merge pull request #184694 from r-ryantm/auto-update/SPAdes
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2022-08-23 20:21:42 +02:00 |
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sratoolkit
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treewide: remove unneeded dots and slashes in sourceRoots
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2023-08-12 08:29:56 +00:00 |
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stacks
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stacks: 2.60 -> 2.62
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2023-02-06 21:36:49 +01:00 |
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star
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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strelka
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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subread
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subread: 2.0.5 -> 2.0.6
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2023-05-10 22:30:35 +10:00 |
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sumatools
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svaba
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treewide: move NIX_CFLAGS_COMPILE to the env attrset
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2023-02-22 21:23:04 +02:00 |
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tandem-aligner
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treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
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2023-08-03 16:32:03 +00:00 |
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tebreak
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treewide: remove nativeBuildInputs that are in stdenv
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2022-04-16 21:46:46 +03:00 |
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treemix
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treemix: init at 1.13
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2022-09-05 06:55:03 +02:00 |
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trf
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trf: init at 4.09.1
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2023-03-19 22:25:42 +09:00 |
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trimal
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trimmomatic
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trimmomatic: init at 0.39
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2023-09-22 13:50:18 -03:00 |
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truvari
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truvari: add patches to fix truvari anno
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2023-05-15 10:01:38 +09:00 |
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varscan
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varscan: 2.4.5 -> 2.4.6
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2023-04-05 14:55:31 +00:00 |
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vcftools
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treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs
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2022-09-26 17:53:26 +03:00 |
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veryfasttree
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veryfasttree: 4.0.2 -> 4.0.3
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2023-09-12 06:13:28 +00:00 |
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whisper
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treewide: pkgs/applications: mark broken for darwin
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2022-05-29 10:56:04 +02:00 |
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xenomapper
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