f9fdf2d402
with structuredAttrs lists will be bash arrays which cannot be exported which will be a issue with some patches and some wrappers like cc-wrapper this makes it clearer that NIX_CFLAGS_COMPILE must be a string as lists in env cause a eval failure
36 lines
1.1 KiB
Nix
36 lines
1.1 KiB
Nix
{ lib, stdenv, fetchFromGitHub, zlib, bzip2, xz }:
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stdenv.mkDerivation rec {
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pname = "freebayes";
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version = "1.3.1";
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src = fetchFromGitHub {
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name = "freebayes-${version}-src";
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owner = "ekg";
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repo = "freebayes";
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rev = "v${version}";
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sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys";
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fetchSubmodules = true;
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};
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buildInputs = [ zlib bzip2 xz ];
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# Workaround build failure on -fno-common toolchains like upstream
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# gcc-10. Otherwise build fails as:
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# ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
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# foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
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env.NIX_CFLAGS_COMPILE = "-fcommon";
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installPhase = ''
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install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
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'';
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meta = with lib; {
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description = "Bayesian haplotype-based polymorphism discovery and genotyping";
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license = licenses.mit;
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homepage = "https://github.com/ekg/freebayes";
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maintainers = with maintainers; [ jdagilliland ];
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platforms = [ "x86_64-linux" ];
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};
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}
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