ff1a94e523
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
76 lines
1.7 KiB
Nix
76 lines
1.7 KiB
Nix
{ lib
|
|
, buildPythonPackage
|
|
, fetchFromGitHub
|
|
, pythonOlder
|
|
, pytestCheckHook
|
|
, lxml
|
|
, matplotlib
|
|
, networkx
|
|
, pandas
|
|
, requests
|
|
, six
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "pyxnat";
|
|
version = "1.6";
|
|
format = "setuptools";
|
|
disabled = pythonOlder "3.8";
|
|
|
|
# PyPI dist missing test configuration files:
|
|
src = fetchFromGitHub {
|
|
owner = "pyxnat";
|
|
repo = "pyxnat";
|
|
rev = "refs/tags/${version}";
|
|
hash = "sha256-QejYisvQFN7CsDOx9wAgTHmRZcSEqgIr8twG4XucfZ4=";
|
|
};
|
|
|
|
propagatedBuildInputs = [
|
|
lxml
|
|
requests
|
|
six
|
|
];
|
|
|
|
# future is not used, and pathlib is installed part of python38+
|
|
# w/o an external package
|
|
prePatch = ''
|
|
substituteInPlace setup.py \
|
|
--replace "pathlib>=1.0" "" \
|
|
--replace "future>=0.16" ""
|
|
sed -i '/--cov/d' setup.cfg
|
|
'';
|
|
|
|
nativeCheckInputs = [
|
|
pytestCheckHook
|
|
matplotlib
|
|
networkx
|
|
pandas
|
|
];
|
|
preCheck = ''
|
|
export PYXNAT_SKIP_NETWORK_TESTS=1
|
|
'';
|
|
pytestFlagsArray = [ "pyxnat" ];
|
|
disabledTestPaths = [
|
|
# try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:
|
|
"pyxnat/tests/pipelines_test.py"
|
|
"pyxnat/tests/search_test.py"
|
|
"pyxnat/tests/user_and_project_management_test.py"
|
|
];
|
|
disabledTests = [
|
|
# try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:
|
|
"test_ashs_volumes"
|
|
"test_inspector_structure"
|
|
];
|
|
|
|
pythonImportsCheck = [ "pyxnat" ];
|
|
|
|
meta = with lib; {
|
|
homepage = "https://pyxnat.github.io/pyxnat";
|
|
description = "Python API to XNAT";
|
|
mainProgram = "sessionmirror.py";
|
|
changelog = "https://github.com/pyxnat/pyxnat/releases/tag/${version}";
|
|
license = licenses.bsd3;
|
|
maintainers = with maintainers; [ bcdarwin ];
|
|
};
|
|
}
|