ff1a94e523
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
48 lines
1.3 KiB
Nix
48 lines
1.3 KiB
Nix
{ lib, stdenv, fetchFromGitHub, zlib }:
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stdenv.mkDerivation {
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pname = "bwa";
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version = "unstable-2022-09-23";
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src = fetchFromGitHub {
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owner = "lh3";
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repo = "bwa";
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rev = "139f68fc4c3747813783a488aef2adc86626b01b";
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hash = "sha256-8u35lTK6gBKeapYoIkG9MuJ/pyy/HFA2OiPn+Ml2C6c=";
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};
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buildInputs = [ zlib ];
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# Avoid hardcoding gcc to allow environments with a different
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# C compiler to build
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preConfigure = ''
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sed -i '/^CC/d' Makefile
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'';
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makeFlags = lib.optional stdenv.hostPlatform.isStatic "AR=${stdenv.cc.targetPrefix}ar";
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# it's unclear which headers are intended to be part of the public interface
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# so we may find ourselves having to add more here over time
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installPhase = ''
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runHook preInstall
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install -vD -t $out/bin bwa
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install -vD -t $out/lib libbwa.a
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install -vD -t $out/include bntseq.h
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install -vD -t $out/include bwa.h
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install -vD -t $out/include bwamem.h
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install -vD -t $out/include bwt.h
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runHook postInstall
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'';
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meta = with lib; {
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description = "A software package for mapping low-divergent sequences against a large reference genome, such as the human genome";
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mainProgram = "bwa";
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license = licenses.gpl3Plus;
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homepage = "https://bio-bwa.sourceforge.net/";
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maintainers = with maintainers; [ luispedro ];
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platforms = platforms.unix;
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};
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}
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