ff1a94e523
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
36 lines
1.4 KiB
Nix
36 lines
1.4 KiB
Nix
{ lib, stdenv, fetchFromGitHub, cmake, zlib }:
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stdenv.mkDerivation rec {
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pname = "diamond";
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version = "2.1.9";
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src = fetchFromGitHub {
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owner = "bbuchfink";
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repo = "diamond";
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rev = "v${version}";
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sha256 = "sha256-cTg9TEpz3FSgX2tpfU4y55cCgFY5+mQY86FziHAwd+s=";
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};
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib ];
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meta = with lib; {
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description = "Accelerated BLAST compatible local sequence aligner";
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mainProgram = "diamond";
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longDescription = ''
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DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. The key features are:
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- Pairwise alignment of proteins and translated DNA at 100x-10,000x speed of BLAST.
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- Frameshift alignments for long read analysis.
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- Low resource requirements and suitable for running on standard desktops or laptops.
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- Various output formats, including BLAST pairwise, tabular and XML, as well as taxonomic classification.
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When using the tool in published research, please cite:
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- Buchfink B, Reuter K, Drost HG, "Sensitive protein alignments at tree-of-life scale using DIAMOND", Nature Methods 18, 366–368 (2021). doi:10.1038/s41592-021-01101-x
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'';
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homepage = "https://github.com/bbuchfink/diamond";
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license = lib.licenses.gpl3Plus;
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maintainers = with lib.maintainers; [ thyol ];
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};
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}
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