78 lines
1.8 KiB
Nix
78 lines
1.8 KiB
Nix
{ lib
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, stdenv
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, fetchurl
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, makeWrapper
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, openjdk17
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, wget
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, which
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, gnused
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, gawk
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, coreutils
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, buildFHSEnv
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}:
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let
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nextflow =
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stdenv.mkDerivation rec {
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pname = "nextflow";
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version = "22.10.6";
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src = fetchurl {
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url = "https://github.com/nextflow-io/nextflow/releases/download/v${version}/nextflow-${version}-all";
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hash = "sha256-zeYsKxWRnzr0W6CD+yjoAXwCN/AbN5P4HhH1oftnrjY=";
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};
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nativeBuildInputs = [
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makeWrapper
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openjdk17
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wget
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which
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gnused
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gawk
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coreutils
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];
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dontUnpack = true;
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installPhase = ''
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runHook preInstall
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mkdir -p $out/bin
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install -Dm755 $src $out/bin/nextflow
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runHook postInstall
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'';
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postFixup = ''
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wrapProgram $out/bin/nextflow \
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--prefix PATH : ${lib.makeBinPath nativeBuildInputs} \
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--set JAVA_HOME ${openjdk17.home}
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'';
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meta = with lib; {
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description = "A DSL for data-driven computational pipelines";
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longDescription = ''
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Nextflow is a bioinformatics workflow manager that enables the development of portable and reproducible workflows.
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It supports deploying workflows on a variety of execution platforms including local, HPC schedulers, AWS Batch, Google Cloud Life Sciences, and Kubernetes.
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Additionally, it provides support for manage your workflow dependencies through built-in support for Conda, Docker, Singularity, and Modules.
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'';
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homepage = "https://www.nextflow.io/";
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changelog = "https://github.com/nextflow-io/nextflow/releases";
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license = licenses.asl20;
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maintainers = [ maintainers.Etjean ];
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mainProgram = "nextflow";
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platforms = platforms.unix;
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};
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};
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in
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if stdenv.isLinux then
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buildFHSEnv
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{
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name = "nextflow";
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targetPkgs = pkgs: [ nextflow ];
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runScript = "nextflow";
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}
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else nextflow
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