R. Ryantm
09bed085c3
clingo: 5.5.2 -> 5.6.0
2022-09-12 11:37:36 +00:00
R. Ryantm
55e1e9a104
jmol: 14.32.73 -> 14.32.74
2022-09-12 07:15:47 +00:00
Sandro
c300be33fd
Merge pull request #186868 from lopsided98/mavproxy-update
2022-09-11 19:21:27 +02:00
Sandro Jäckel
224da23db2
sasview: remove unused input
2022-09-11 16:25:56 +02:00
Sandro
785031e430
Merge pull request #185819 from apraga/gatk-4.2.6.1
2022-09-10 21:31:42 +02:00
Christian Kögler
a25f0b9bbd
Merge pull request #190317 from r-ryantm/auto-update/nanovna-saver
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nanovna-saver: 0.4.0 -> 0.5.1
2022-09-10 15:58:21 +02:00
R. Ryantm
6e55797c64
nanovna-saver: 0.4.0 -> 0.5.1
2022-09-10 01:28:51 +00:00
Sandro
65c1313165
Merge pull request #189758 from tjni/r-stackprotector
2022-09-10 00:41:39 +02:00
Mario Rodas
448df40425
Merge pull request #190430 from natsukium/mafft/update
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mafft: 7.505 -> 7.508
2022-09-09 09:02:08 -05:00
Jonas Heinrich
89da4a3ace
Merge pull request #190382 from 4825764518/qalculate-qt-4.3.0
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qalculate-qt: 4.2.0 -> 4.3.0
2022-09-09 10:45:41 +02:00
Vincent Laporte
a22abdf7c2
acgtk: 1.5.2 → 1.5.4
2022-09-09 08:53:49 +02:00
natsukium
9e65d09e3d
mafft: 7.505 -> 7.508
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changed to fetch from new gitlab repository
2022-09-09 13:26:38 +09:00
Dmitry Kalinkin
ea1dcc4f8b
Merge pull request #189926 from veprbl/pr/root_rip_via_setup_hook
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root: populate ROOT_INCLUDE_PATH via the setupHook
2022-09-08 19:45:45 -04:00
4825764518
4dbacd4930
qalculate-qt: 4.2.0 -> 4.3.0
2022-09-08 16:16:51 -04:00
4825764518
eeefb876af
qalculate-qt: init at 4.2.0
2022-09-08 14:20:20 -04:00
R. Ryantm
914100fd45
snakemake: 7.12.1 -> 7.14.0
2022-09-08 09:57:07 -04:00
Jonas Heinrich
eab3e4bffa
Merge pull request #190087 from victormignot/systemc
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systemc: Init at 2.3.3
2022-09-07 21:16:40 +02:00
7c6f434c
41df56c421
Merge pull request #189784 from collares/singular-431p2
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singular: 4.3.1 -> 4.3.1p2
2022-09-07 18:58:16 +00:00
Théo Zimmermann
4754c69e97
Merge pull request #189997 from r-ryantm/auto-update/coq_8_16
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coq_8_16: 8.16+rc1 -> 8.16.0
2022-09-07 14:48:05 +02:00
Victor Mignot
777ba23c17
systemc: Init at 2.3.3
2022-09-07 08:04:56 -04:00
Christian Kögler
1034788cf2
Merge pull request #189339 from r-ryantm/auto-update/jmol
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jmol: 14.32.68 -> 14.32.73
2022-09-06 22:09:07 +02:00
Timo Kaufmann
5e03752766
Merge pull request #184457 from r-ryantm/auto-update/polymake
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polymake: 4.6 -> 4.7
2022-09-06 16:22:36 +02:00
Timo Kaufmann
b292bfd0ab
Merge pull request #189776 from collares/sage-docindex
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sageWithDoc: fix documentation index
2022-09-06 16:15:54 +02:00
R. Ryantm
a037a50b46
coq_8_16: 8.16+rc1 -> 8.16.0
2022-09-06 12:15:29 +00:00
Dmitry Kalinkin
0fe6d6f6b9
root: populate ROOT_INCLUDE_PATH via the setupHook
2022-09-05 18:47:48 -04:00
R. Ryantm
c7832514ef
igv: 2.14.0 -> 2.14.1
2022-09-05 22:29:15 +00:00
R. Ryantm
3bced25629
gama: 2.21 -> 2.22
2022-09-05 22:06:20 +00:00
markuskowa
fec757aa4e
Merge pull request #189871 from r-ryantm/auto-update/gromacs
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gromacs: 2022.2 -> 2022.3
2022-09-05 22:27:10 +02:00
Mauricio Collares
13d2edaa42
sageWithDoc: fix documentation index
2022-09-05 12:42:36 -03:00
R. Ryantm
53a4c0bec3
gromacs: 2022.2 -> 2022.3
2022-09-05 15:04:40 +00:00
Sandro
ef987a9604
Merge pull request #189329 from bcdarwin/itk4-removal
2022-09-05 16:05:51 +02:00
Sandro
73bf7a0ca0
Merge pull request #181954 from bzizou/treemix
2022-09-05 15:57:48 +02:00
Bruno Bzeznik
7c09cfdc1a
treemix: init at 1.13
2022-09-05 06:55:03 +02:00
Mauricio Collares
91311e30b3
singular: disable docbuilding on darwin
2022-09-04 22:12:22 -03:00
Mauricio Collares
ea79b7ad0c
singular: 4.3.1 -> 4.3.1p2
2022-09-04 21:42:47 -03:00
Jonas Heinrich
eb3d3b2e90
Merge pull request #175449 from bzizou/iqtree
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iqtree: init at 2.2.0.4
2022-09-04 23:58:04 +02:00
Ben Wolsieffer
073d3c1b77
mavproxy: add lxml dependency
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Also, alphabetize the dependencies.
Add dependencies that are not part of install_requires (apparently due to
some issue with pip and distro packaging). The closure size is increased
somewhat by OpenCV, but this allows all the tools to work correctly.
2022-09-04 17:30:03 -04:00
Jonas Heinrich
bb738c5202
Merge pull request #179257 from mrbitt/master
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Update perseus
2022-09-04 23:09:19 +02:00
Theodore Ni
093edcbfcb
R: reenable stackprotector on aarch64-darwin
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The original error that required disabling the stack protector on
aarch64-darwin has been fixed in GCC.
2022-09-04 11:33:51 -07:00
Ben Darwin
1280129aab
EZminc: itk4 -> itk (formally; package is broken)
2022-09-04 13:36:24 -04:00
Ben Darwin
961b308fe1
ants: 2.2.0 -> 2.4.1
2022-09-04 13:36:24 -04:00
Sandro
6b52fe0b72
Merge pull request #188855 from risicle/ris-hal-fmt-8.0.1-override
2022-09-04 16:30:36 +02:00
Alexis Praga
95da303902
gatk : init at 4.2.6.1
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GATK is the industry standard for genetics analysis, more precisely for
identifying SNPs and indels in germline DNA and RNAseq data .
This package does not ship the Spark version.
Apply suggestions from code review
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-09-04 15:34:30 +02:00
Iztok Fister Jr
af482381f6
uarmsolver: init at 0.2.4 ( #188274 )
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Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-09-04 14:44:43 +02:00
Christian Kögler
8edb96b411
Merge pull request #189426 from kilianar/cadical-1.5.0
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cadical: 1.4.1 -> 1.5.0
2022-09-04 12:49:36 +02:00
Jonas Heinrich
3b3a01e3f9
Merge pull request #188785 from jbedo/last
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last: 1406 -> 1409
2022-09-04 12:40:30 +02:00
Sandro
8e4ec09365
Merge pull request #187023 from panicgh/dataexplorer
2022-09-04 12:01:50 +02:00
Nicolas Benes
16013ac6c4
dataexplorer: init at 3.6.2
2022-09-04 10:53:16 +02:00
Bobby Rong
187f55926c
Merge pull request #189430 from r-ryantm/auto-update/cbmc
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cbmc: 5.64.0 -> 5.65.0
2022-09-04 10:19:33 +08:00
Justin Bedo
d9acf90371
last: 1406 -> 1409
2022-09-04 10:36:01 +10:00
Sandro
9b214e6dad
Merge pull request #177830 from r-ryantm/auto-update/eggnog-mapper
2022-09-03 22:43:11 +02:00
Jörg Thalheim
932758095e
Merge pull request #189576 from r-ryantm/auto-update/mavproxy
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mavproxy: 1.8.52 -> 1.8.55
2022-09-03 17:31:01 +01:00
Jörg Thalheim
5c3f9c0213
mavproxy: add missing opencv dependency
2022-09-03 17:49:42 +02:00
Robert Scott
fd66073cf3
Merge pull request #189414 from kilianar/kissat-3.0.0
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kissat: 2.0.1 -> 3.0.0
2022-09-03 11:53:29 +01:00
R. Ryantm
f5a5ffd59f
mavproxy: 1.8.52 -> 1.8.55
2022-09-03 10:05:19 +00:00
Robert Scott
3f9b0f53e4
Merge pull request #188650 from movingco/add-z3-411
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z3: add 4.11
2022-09-02 18:24:42 +01:00
R. Ryantm
35657ce4a6
cbmc: 5.64.0 -> 5.65.0
2022-09-02 10:22:16 +00:00
kilianar
10461fa316
cadical: 1.4.1 -> 1.5.0
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https://github.com/arminbiere/cadical/releases/tag/rel-1.5.0
2022-09-02 11:45:36 +02:00
kilianar
c8546067ce
kissat: 2.0.1 -> 3.0.0
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https://github.com/arminbiere/kissat/releases/tag/rel-3.0.0
2022-09-02 10:24:30 +02:00
R. Ryantm
add9d281ce
jmol: 14.32.68 -> 14.32.73
2022-09-01 18:57:34 +00:00
R. Ryantm
33c6733a54
nvc: 1.7.0 -> 1.7.1
2022-09-01 14:56:35 +00:00
kilianar
2b3ec1d37a
lean: 3.47.0 -> 3.48.0
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https://github.com/leanprover-community/lean/releases/tag/v3.48.0
2022-08-31 11:32:21 +02:00
Nguyễn Gia Phong
45af48e472
klee: use the same LLVM version for clang
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Currently they are the same, but llvmPackages_11 is hardcoded
which is awkward to override.
2022-08-30 15:08:15 +09:00
Robert Scott
829e42e59c
Merge pull request #188829 from r-ryantm/auto-update/cvc5
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cvc5: 1.0.1 -> 1.0.2
2022-08-29 21:43:21 +01:00
Robert Scott
29d9c25626
hal-hardware-analyzer: use overridden fmt 8.0.1 for spdlog
2022-08-29 19:44:19 +01:00
Jonas Heinrich
5d40029409
Merge pull request #187556 from r-ryantm/auto-update/streamlit
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streamlit: 1.11.1 -> 1.12.2
2022-08-29 20:08:23 +02:00
tpdcl
4f39ada71b
FAHClient: 7.6.13 -> 7.6.21 ( #188476 )
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This time also in master so it can get in unstable
2022-08-29 19:51:58 +02:00
R. Ryantm
616e78d316
cvc5: 1.0.1 -> 1.0.2
2022-08-29 17:17:59 +00:00
superherointj
2a7368c1a1
Merge pull request #188553 from marsam/update-lean
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lean: 3.46.0 -> 3.47.0
2022-08-28 19:42:11 -03:00
Ian Macalinao
c05b66233e
z3: 4.8 -> 4.11 https://github.com/Z3Prover/z3/releases/tag/z3-4.11.0
2022-08-28 11:06:19 -05:00
Jonas Heinrich
3e1cc19497
Merge pull request #183690 from r-ryantm/auto-update/openhantek6022
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openhantek6022: 3.2.5 -> 3.3.1
2022-08-28 14:22:00 +02:00
Jonas Heinrich
c4fd9300ff
Merge pull request #184218 from r-ryantm/auto-update/gwyddion
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gwyddion: 2.60 -> 2.61
2022-08-28 13:01:46 +02:00
R. Ryantm
e123a3b380
streamlit: 1.11.1 -> 1.12.2
2022-08-27 17:30:12 +00:00
Artturi
79c42aa06c
Merge pull request #186564 from Artturin/crossevalfixes
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Fixes for cross-compilation
2022-08-27 17:49:00 +03:00
Jonas Heinrich
ed227dc9fb
Merge pull request #168109 from r-ryantm/auto-update/bcftools
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bcftools: 1.15 -> 1.16
2022-08-27 08:51:34 +02:00
Mario Rodas
40ad284f8f
lean: 3.46.0 -> 3.47.0
2022-08-27 04:20:00 +00:00
Theodore Ni
bb1d34d0f1
cvc3: reenable stackprotector on aarch64-darwin
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The original error that required disabling the stack protector on
aarch64-darwin has been fixed in GCC.
2022-08-25 19:11:45 -07:00
Jonas Heinrich
21ba29f226
Merge pull request #181338 from thyol/diamond
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diamond: 0.8.36 -> 2.0.15
2022-08-25 15:25:03 +02:00
Jonas Heinrich
a289c54a90
Merge pull request #184365 from r-ryantm/auto-update/marvin
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marvin: 22.8.0 -> 22.13.0
2022-08-25 10:21:44 +02:00
Sandro
2b87b01423
Merge pull request #187334 from fedeinthemix/wolfram-update
2022-08-24 22:07:00 +02:00
Jonas Heinrich
b8e0c9b652
Merge pull request #183253 from r-ryantm/auto-update/angsd
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angsd: 0.937 -> 0.938
2022-08-24 10:35:05 +02:00
Jonas Heinrich
c199cfabff
Merge pull request #184694 from r-ryantm/auto-update/SPAdes
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SPAdes: 3.15.4 -> 3.15.5
2022-08-23 20:21:42 +02:00
K900
05aa6c1026
xyce: fix eval after #187842
2022-08-23 09:43:48 +03:00
Gabriel Ebner
c83b87fecd
Merge pull request #187883 from alyaeanyx/qalculate-4.3.0
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{libqalculate, qalculate-gtk}: 4.2.0 -> 4.3.0
2022-08-22 18:47:13 +02:00
Gabriel Ebner
e99329eb02
elan: overwrite llvm-ar with stdenv ar
2022-08-22 16:52:52 +02:00
alyaeanyx
61b47c361c
{libqalculate, qalculate-gtk}: 4.2.0 -> 4.3.0
2022-08-22 16:14:34 +02:00
Jonas Heinrich
ed7e80c85b
Merge pull request #183893 from r-ryantm/auto-update/emuflight-configurator
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emuflight-configurator: 0.4.0 -> 0.4.1
2022-08-22 16:07:10 +02:00
Jonas Heinrich
fbf9205774
Merge pull request #185912 from r-ryantm/auto-update/fityk
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fityk: 1.3.1 -> 1.3.2
2022-08-21 21:34:00 +02:00
Jonas Heinrich
5cb64f6046
Merge pull request #186958 from r-ryantm/auto-update/igv
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igv: 2.13.2 -> 2.14.0
2022-08-21 21:11:49 +02:00
Jonas Heinrich
48c0cae744
Merge pull request #184713 from r-ryantm/auto-update/siril
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siril: 1.0.0 -> 1.0.3
2022-08-21 18:13:09 +02:00
Jonas Heinrich
4cde04611f
Merge pull request #184011 from r-ryantm/auto-update/fricas
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fricas: 1.3.7 -> 1.3.8
2022-08-21 15:16:39 +02:00
R. Ryantm
49f4071f30
eggnog-mapper: 2.1.7 -> 2.1.9
2022-08-21 12:45:21 +00:00
Jonas Heinrich
8508d5decf
Merge pull request #183724 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.26.11 -> 2.27.4
2022-08-21 10:03:42 +02:00
Sandro
c637bce3d9
Merge pull request #187429 from HHR2020/geogebra-723
2022-08-21 03:49:26 +02:00
HHR2020
9a946f0bf4
geogebra6: 6-0-676-0 -> 6-0-723-0
2022-08-19 18:16:37 +08:00
HHR2020
34cfab69d2
geogebra: 5-0-706-0 -> 5-0-723-0
2022-08-19 18:16:12 +08:00
Christian Kögler
f99c37f463
Merge pull request #187340 from r-ryantm/auto-update/cbmc
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cbmc: 5.63.0 -> 5.64.0
2022-08-19 10:24:27 +02:00
Robert Scott
dbb68933c8
Merge pull request #185326 from risicle/ris-streamlit-1.11.1
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streamlit: 1.2.0 -> 1.11.1
2022-08-18 23:39:36 +01:00
R. Ryantm
e0377f4a23
cbmc: 5.63.0 -> 5.64.0
2022-08-18 20:25:31 +00:00
Federico Beffa
c01bc4268a
wolfram-engine: 13.0.1 -> 13.1.0
2022-08-18 21:27:29 +02:00
