nixpkgs/pkgs/applications/science/biology
2023-11-28 16:48:10 +02:00
..
angsd angsd: pull patch pending upstream inclusion for parallel build fix 2023-08-20 08:50:53 +01:00
ants ants: update postInstall attribute 2023-09-02 23:09:28 +02:00
aragorn aragorn: fix format 2023-06-08 18:42:29 +09:00
astral
bamtools bamtools: init at 2.5.2 2023-08-18 00:17:15 +09:00
bayescan
bcftools bcftools: 1.17 -> 1.18 2023-08-01 03:38:31 +00:00
bedops
bedtools bedtools: 2.31.0 -> 2.31.1 2023-11-09 06:18:08 +00:00
bftools
bioawk bioawk: init at unstable-2017-09-11 2023-08-18 00:36:09 +09:00
blast blast-bin: add sourceProvenance to meta 2023-10-07 10:12:24 +09:00
bowtie
bowtie2 bowtie2: enable tests 2023-10-20 17:08:20 +09:00
bppsuite bppsuite: fix homepage 2023-06-15 12:18:11 -04:00
bwa bwa: add runHook 2023-05-15 16:13:49 +09:00
bwa-mem2 bwa-mem2: init at version 2.2.1 2023-08-23 15:02:06 -07:00
cd-hit
clustal-omega
cmtk cmtk: fix format 2023-07-11 17:50:47 +09:00
conglomerate
dcm2niix
deeptools deeptools: 3.5.1 -> 3.5.4 2023-10-18 19:06:01 +02:00
delly delly: 1.1.7 -> 1.1.8 2023-10-25 10:07:12 +00:00
diamond diamond: 2.1.7 -> 2.1.8 2023-06-25 04:35:30 +00:00
dssp dssp: 4.4.4.1 -> 4.4.5 2023-11-24 22:34:06 +09:00
ecopcr
eggnog-mapper
emboss
est-sfs
exonerate
EZminc
fastp fastp: 0.23.3 -> 0.23.4 2023-06-04 03:21:21 +00:00
febio-studio
flywheel-cli treewide: s_targetPlatform_hostPlatform_ in non-compiler packages 2023-11-17 08:07:34 +00:00
freebayes
gatk
genmap
hh-suite
hisat2
hmmer hmmer: add changelog to meta 2023-09-24 04:24:00 +00:00
igv igv: Fix missing wrapGAppsHook causing causing GLib-GIO-ERROR 2023-11-26 19:57:18 +01:00
inormalize
iqtree iqtree: 2.2.2.6 -> 2.2.2.7 2023-08-25 12:25:13 +00:00
itsx
iv
jbrowse jbrowse: init at 2.5.0 2023-05-12 11:24:26 -07:00
kalign kalign: init at 3.3.5 2023-06-14 21:05:58 +09:00
kallisto kallisto: 0.48.0 -> 0.50.0 2023-07-09 17:19:43 +00:00
kent
kssd kssd: enable aarch64-linux support & tests 2023-11-03 19:34:28 +09:00
last last: 1471 -> 1499 2023-11-01 19:08:21 +00:00
macs2 macs2: 2.2.8 -> 2.2.9.1 2023-08-11 14:45:45 -07:00
macse
mafft
manta
megahit
meme-suite
messer-slim
migrate
minc-tools
minc-widgets
minia
minimap2
mmseqs2 mmseqs2: 14-7e284 -> 15-6f452 2023-11-01 09:19:34 +00:00
mni_autoreg
mrbayes
mrtrix mrtrix: unstable-2021-11-25 -> 3.0.4 2023-09-06 12:11:38 -04:00
muscle treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
N3
nest nest-mpi: 3.5 -> 3.6 2023-09-30 18:54:13 +00:00
neuron neuron-mpi: 8.2.2 -> 8.2.3 2023-09-23 02:33:53 +00:00
niftyreg
niftyseg
obitools
octopus various packages: pin boost179 2023-07-22 16:54:22 +02:00
paml paml: refactor 2023-07-14 15:08:14 +09:00
picard-tools picard-tools: 3.1.0 -> 3.1.1 2023-11-15 14:35:32 +00:00
platypus
plink-ng
poretools treewide: remove execute bit for non-executable *.nix files 2023-10-20 19:55:39 +02:00
prodigal
quast treewide: change pythonForBuild to pythonOnBuildForHost 2023-11-05 17:42:12 -08:00
raxml raxml: 8.2.12 -> 8.2.13 2023-10-16 22:16:12 +00:00
repseek
sambamba sambamba: 1.0.0 -> 1.0.1 2023-08-25 06:20:00 +00:00
samblaster
samtools samtools: 1.17 -> 1.18 2023-08-07 01:22:06 +00:00
seaview
seqkit seqkit: 2.5.0 -> 2.5.1 2023-08-10 04:42:38 +00:00
seqtk seqtk: 1.3 -> 1.4 2023-05-28 06:48:51 +00:00
snpeff
somatic-sniper
sortmerna treewide: replace -DCMAKE_BUILD_TYPE in cmakeFlags with cmakeBuildType 2023-09-08 14:18:26 +00:00
spades
sratoolkit treewide: remove unneeded dots and slashes in sourceRoots 2023-08-12 08:29:56 +00:00
stacks stacks: set platforms 2023-10-01 02:26:34 +02:00
star treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
strelka
subread subread: 2.0.5 -> 2.0.6 2023-05-10 22:30:35 +10:00
sumatools
svaba
tandem-aligner treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
tebreak
treemix
trf
trimal treewide: remove execute bit for non-executable *.nix files 2023-10-20 19:55:39 +02:00
trimmomatic trimmomatic: init at 0.39 2023-09-22 13:50:18 -03:00
truvari truvari: 4.0.0 -> 4.1.0 2023-10-07 01:30:27 +09:00
varscan
vcftools treewide: remove execute bit for non-executable *.nix files 2023-10-20 19:55:39 +02:00
veryfasttree veryfasttree: 4.0.2 -> 4.0.3 2023-09-12 06:13:28 +00:00
whisper
xenomapper