..
angsd
angsd: pull patch pending upstream inclusion for parallel build fix
2023-08-20 08:50:53 +01:00
ants
ants: 2.5.0 -> 2.5.1
2024-01-26 01:12:12 +01:00
aragorn
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
astral
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
bamtools
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
bayescan
bcftools
bcftools: 1.18 -> 1.19
2023-12-13 06:48:21 +00:00
bedops
bedtools
bedtools: 2.31.0 -> 2.31.1
2023-11-09 06:18:08 +00:00
bftools
bioawk
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
blast
blast-bin: add sourceProvenance to meta
2023-10-07 10:12:24 +09:00
bowtie
bowtie2
bowtie2: 2.5.2 -> 2.5.3
2024-01-18 01:41:31 +00:00
bppsuite
bppsuite: fix homepage
2023-06-15 12:18:11 -04:00
bwa
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
bwa-mem2
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
cd-hit
clustal-omega
cmtk
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
conglomerate
dcm2niix
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
deeptools
deeptools: 3.5.4 -> 3.5.5
2024-03-09 10:06:54 +00:00
delly
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
diamond
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
dssp
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
ecopcr
eggnog-mapper
eggnog-mapper: 2.1.10 -> 2.1.12
2024-01-18 19:17:47 +00:00
emboss
est-sfs
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
exonerate
EZminc
fastp
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
febio-studio
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
flywheel-cli
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
freebayes
gatk
gatk: 4.4.0.0 -> 4.5.0.0
2023-12-15 04:20:42 +00:00
genmap
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
hh-suite
hh-suite: fix build on GCC 13
2024-02-08 21:54:47 +00:00
hisat2
hmmer
hmmer: add changelog to meta
2023-09-24 04:24:00 +00:00
igv
igv: 2.17.2 -> 2.17.3
2024-03-12 02:48:25 +00:00
inormalize
inormalize: fix build on darwin
2024-01-21 23:26:55 +01:00
iqtree
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
itsx
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
iv
jbrowse
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
kalign
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
kallisto
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
kent
perlPackages.BioBigFile: Addressing reviewer change
2023-11-21 23:16:39 +01:00
kssd
kssd: enable aarch64-linux support & tests
2023-11-03 19:34:28 +09:00
last
last: 1541 -> 1542
2024-02-19 07:08:37 +00:00
macs2
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
macse
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
mafft
mafft: 7.520 -> 7.525
2024-03-13 12:21:27 +00:00
manta
megahit
megahit: fir gcc-13
build failure
2024-02-10 10:26:43 +00:00
meme-suite
messer-slim
messer-slim: 4.0.1 -> 4.1
2023-12-16 20:13:33 +00:00
migrate
minc-tools
minc-widgets
minia
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
minimap2
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
mmseqs2
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
mni_autoreg
mrbayes
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
mrtrix
mrtrix: unstable-2021-11-25 -> 3.0.4
2023-09-06 12:11:38 -04:00
muscle
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
N3
n3: fix build on darwin
2024-01-21 23:22:54 +01:00
nest
nest-mpi: 3.5 -> 3.6
2023-09-30 18:54:13 +00:00
neuron
neuron-mpi: 8.2.2 -> 8.2.3
2023-09-23 02:33:53 +00:00
niftyreg
niftyseg
obitools
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
octopus
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
paml
paml: refactor
2023-07-14 15:08:14 +09:00
picard-tools
picard-tools: 3.1.0 -> 3.1.1
2023-11-15 14:35:32 +00:00
platypus
plink-ng
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
poretools
poretools: mark as broken
2023-12-11 04:28:39 +00:00
prodigal
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
quast
treewide: change pythonForBuild to pythonOnBuildForHost
2023-11-05 17:42:12 -08:00
raxml
raxml: 8.2.12 -> 8.2.13
2023-10-16 22:16:12 +00:00
repseek
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
sambamba
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
samblaster
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
samtools
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
seaview
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
seqkit
seqkit: 2.7.0 -> 2.8.0
2024-03-12 00:29:44 +00:00
seqtk
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
snpeff
somatic-sniper
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
sortmerna
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
spades
SPAdes: fix build
2024-01-20 15:28:48 -03:00
sratoolkit
treewide: remove unneeded dots and slashes in sourceRoot
s
2023-08-12 08:29:56 +00:00
stacks
stacks: 2.65 -> 2.66
2024-01-24 07:54:36 +00:00
star
treewide: noop: refer to src.name
or similar in sourceRoot
where appropriate, part 1: trivial cases
2023-08-03 16:32:03 +00:00
strelka
strelka: add aarch64-linux support
2023-12-11 13:37:17 +01:00
subread
sumatools
svaba
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
tandem-aligner
treewide: noop: refer to src.name
or similar in sourceRoot
where appropriate, part 1: trivial cases
2023-08-03 16:32:03 +00:00
tebreak
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
treemix
trf
trimal
treewide: remove execute bit for non-executable *.nix
files
2023-10-20 19:55:39 +02:00
trimmomatic
trimmomatic: make deterministic and clean up
2024-01-04 21:45:11 +01:00
truvari
truvari: 4.0.0 -> 4.1.0
2023-10-07 01:30:27 +09:00
varscan
vcftools
treewide: remove execute bit for non-executable *.nix
files
2023-10-20 19:55:39 +02:00
veryfasttree
treewide: add meta.mainProgram to packages with a single binary
2024-03-19 03:14:51 +01:00
whisper
whisper: enable parallel building
2024-01-25 19:27:12 +00:00
xenomapper