f9fdf2d402
with structuredAttrs lists will be bash arrays which cannot be exported which will be a issue with some patches and some wrappers like cc-wrapper this makes it clearer that NIX_CFLAGS_COMPILE must be a string as lists in env cause a eval failure
43 lines
1.2 KiB
Nix
43 lines
1.2 KiB
Nix
{ lib, stdenv, fetchurl, unzip, llvmPackages }:
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stdenv.mkDerivation rec {
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pname = "bayescan";
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version = "2.1";
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src = fetchurl {
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url = "http://cmpg.unibe.ch/software/BayeScan/files/BayeScan${version}.zip";
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sha256 = "0ismima8j8z0zj9yc267rpf7z90w57b2pbqzjnayhc3ab8mcbfy6";
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};
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nativeBuildInputs = [ unzip ];
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buildInputs = lib.optional stdenv.cc.isClang llvmPackages.openmp;
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# Disable FORTIFY_SOURCE or the binary fails with "buffer overflow"
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hardeningDisable = [ "fortify" ];
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sourceRoot = "BayeScan${version}/source";
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postPatch = ''
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substituteInPlace Makefile --replace "-static" "" \
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--replace "g++" "c++"
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'';
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installPhase = ''
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mkdir -p $out/bin
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mkdir -p $out/share/doc/bayescan
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cp bayescan_${version} $out/bin
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cp -r ../*pdf ../input_examples ../"R functions" $out/share/doc/bayescan
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'';
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env.NIX_CFLAGS_COMPILE = toString [ "-std=c++14" ];
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meta = with lib; {
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description = "Detecting natural selection from population-based genetic data";
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homepage = "http://cmpg.unibe.ch/software/BayeScan";
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license = licenses.gpl3;
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maintainers = [ maintainers.bzizou ];
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mainProgram = "bayescan_${version}";
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platforms = lib.platforms.all;
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};
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}
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