R. Ryantm
605d013aac
igv: 2.15.1 -> 2.15.4
2023-01-03 14:36:54 +08:00
Ben Darwin
9c748218f2
itk: unstable -> 5.3.0
2022-12-27 09:06:37 +01:00
Sandro
b20fb264cc
Merge pull request #197575 from thyol/sratoolkit-init
2022-12-24 02:58:47 +01:00
Weijia Wang
fa19b16e93
ecopcr: 0.8.0 -> 1.0.1
2022-12-08 04:35:53 +01:00
Jonas Heinrich
20193b6d86
Merge pull request #202395 from thyol/muscle
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muscle: 3.8.31 -> 5.1.0
2022-11-24 15:47:12 +01:00
Jonas Heinrich
57728b51cf
Merge pull request #202404 from thyol/veryfasttree
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veryfasttree: init at 3.1.1
2022-11-24 15:14:13 +01:00
thyol
cdcb7946ba
veryfasttree: init at 3.1.1
2022-11-22 20:45:45 +01:00
thyol
35d3a6fa79
muscle: add myself to maintainers
2022-11-22 20:19:17 +01:00
thyol
d7c8595f62
muscle: 3.8.31 -> 5.1.0
2022-11-22 20:19:17 +01:00
thyol
81d6f1c7dc
sratoolkit: init at 2.11.3
2022-11-21 20:27:28 +01:00
R. Ryantm
6ba0d20487
igv: 2.14.1 -> 2.15.1
2022-11-20 14:06:29 +08:00
R. Ryantm
c7ba9b459c
delly: 1.1.5 -> 1.1.6
2022-11-08 18:21:37 +00:00
Justin Bedő
3a90ab68e6
Merge pull request #197631 from jbedo/octopus
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octopus-caller: backport patch to fix build
2022-11-07 21:26:21 +00:00
Bruno Bzeznik
9243a44c9c
seqkit: init at 2.3.1
2022-11-04 08:51:32 +01:00
Stanisław Pitucha
9ed8ce7ff3
Merge pull request #198609 from natsukium/mmseqs2/init
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mmseqs2: init at 14-7e284
2022-11-01 21:47:20 +11:00
natsukium
ed7511ad02
mmseqs2: init at 14-7e284
2022-10-31 23:49:10 +09:00
Justin Bedo
5f5bb45093
octopus-caller: backport patch to fix build
2022-10-25 09:52:28 +11:00
OPNA2608
982a1bfd80
sambamba: fix compilation on Darwin, cleanup installPhase
2022-10-23 16:12:47 +02:00
Jan Tojnar
457f28f6f8
Merge branch 'master' into staging-next
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; Conflicts:
; pkgs/development/tools/codespell/default.nix
codespell 2.2.2 switched to pyproject & setuptools_scm:
https://github.com/codespell-project/codespell/pull/2523
2022-10-19 05:24:28 +02:00
R. Ryantm
4ab06e3223
ants: 2.4.1 -> 2.4.2
2022-10-19 09:19:31 +08:00
github-actions[bot]
f52955a521
Merge master into staging-next
2022-10-16 18:01:42 +00:00
R. Ryantm
00b3b4ee24
gatk: 4.2.6.1 -> 4.3.0.0
2022-10-16 21:48:30 +08:00
Martin Weinelt
51fcbf5bb7
Merge remote-tracking branch 'origin/master' into staging-next
2022-10-16 00:18:40 +02:00
Jonas Heinrich
9259c4b841
Merge pull request #195990 from r-ryantm/auto-update/angsd
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angsd: 0.938 -> 0.940
2022-10-15 09:33:23 +02:00
github-actions[bot]
886633ba43
Merge master into staging-next
2022-10-15 00:04:00 +00:00
R. Ryantm
4cee9b9ddb
angsd: 0.938 -> 0.940
2022-10-14 14:50:26 +00:00
Artturi
e66d2fd89d
Merge pull request #194256 from Artturin/treewides2
2022-10-13 00:08:01 +03:00
Markus S. Wamser
c9d167f174
pkgs.applications: remove unused args
2022-10-12 16:00:16 +02:00
Martin Weinelt
cf7f4393f3
Merge pull request #193494 from NixOS/staging-next
2022-10-11 01:12:59 +02:00
Alexis Praga
2ce78bd571
gatk: add java and python to PATH
...
gatk is actually a python script that starts either the local or spark
.jar file according to a fixed setup.
In the initial commit, neither java nor python were present in PATH.
2022-10-10 23:06:01 +02:00
Artturin
7e49471316
treewide: optional -> optionals where the argument is a list
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the argument to optional should not be list
2022-10-10 15:40:21 +03:00
github-actions[bot]
f18d801779
Merge staging-next into staging
2022-09-28 18:05:53 +00:00
R. Ryantm
ddf9f1800a
delly: 1.1.3 -> 1.1.5
2022-09-27 11:26:09 +00:00
Artturin
0734f54ef2
treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs
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found with nixpkgs-lint
2022-09-26 17:53:26 +03:00
Justin Bedő
d21b5ac044
Merge pull request #192211 from r-ryantm/auto-update/last
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last: 1409 -> 1411
2022-09-26 11:49:30 +10:00
Brad Langhorst
2beb26b45b
seqtk: init at 1.3
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Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>
2022-09-25 19:55:58 -04:00
R. Ryantm
1008651931
last: 1409 -> 1411
2022-09-21 08:24:01 +00:00
Christian Kögler
e06e88d003
Merge pull request #189923 from r-ryantm/auto-update/igv
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igv: 2.14.0 -> 2.14.1
2022-09-18 15:59:16 +02:00
R. Ryantm
9da745bfaf
messer-slim: 4.0 -> 4.0.1
2022-09-15 22:25:51 +00:00
Sandro
785031e430
Merge pull request #185819 from apraga/gatk-4.2.6.1
2022-09-10 21:31:42 +02:00
natsukium
9e65d09e3d
mafft: 7.505 -> 7.508
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changed to fetch from new gitlab repository
2022-09-09 13:26:38 +09:00
R. Ryantm
c7832514ef
igv: 2.14.0 -> 2.14.1
2022-09-05 22:29:15 +00:00
Sandro
ef987a9604
Merge pull request #189329 from bcdarwin/itk4-removal
2022-09-05 16:05:51 +02:00
Sandro
73bf7a0ca0
Merge pull request #181954 from bzizou/treemix
2022-09-05 15:57:48 +02:00
Bruno Bzeznik
7c09cfdc1a
treemix: init at 1.13
2022-09-05 06:55:03 +02:00
Jonas Heinrich
eb3d3b2e90
Merge pull request #175449 from bzizou/iqtree
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iqtree: init at 2.2.0.4
2022-09-04 23:58:04 +02:00
Ben Darwin
1280129aab
EZminc: itk4 -> itk (formally; package is broken)
2022-09-04 13:36:24 -04:00
Ben Darwin
961b308fe1
ants: 2.2.0 -> 2.4.1
2022-09-04 13:36:24 -04:00
Alexis Praga
95da303902
gatk : init at 4.2.6.1
...
GATK is the industry standard for genetics analysis, more precisely for
identifying SNPs and indels in germline DNA and RNAseq data .
This package does not ship the Spark version.
Apply suggestions from code review
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-09-04 15:34:30 +02:00
Jonas Heinrich
3b3a01e3f9
Merge pull request #188785 from jbedo/last
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last: 1406 -> 1409
2022-09-04 12:40:30 +02:00
